RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 PDFQ9HBH1 243 aa21.83■■□□□ 1.09
TRIM28-202ENST00000341753 MARCH2Q9P0N8 246 aa21.83■■□□□ 1.09
TRIM28-202ENST00000341753 TAPBPO15533 448 aa21.83■■□□□ 1.08
TRIM28-202ENST00000341753 RGS14O43566 566 aa21.83■■□□□ 1.08
TRIM28-202ENST00000341753 LRATO95237 230 aa21.83■■□□□ 1.08
TRIM28-202ENST00000341753 S100BP04271 92 aaPredicted RBP21.83■■□□□ 1.08
TRIM28-202ENST00000341753 BMPR1AP36894 532 aa21.83■■□□□ 1.08
TRIM28-202ENST00000341753 CREMQ03060 361 aa21.83■■□□□ 1.08
TRIM28-202ENST00000341753 MAD2L1BPQ15013 274 aaPredicted RBP21.83■■□□□ 1.08
TRIM28-202ENST00000341753 ZC3H12BQ5HYM0 836 aaKnown RBP21.83■■□□□ 1.08
TRIM28-202ENST00000341753 GLB1LQ6UWU2 654 aa21.83■■□□□ 1.08
TRIM28-202ENST00000341753 CINPQ9BW66 212 aaPredicted RBP21.83■■□□□ 1.08
TRIM28-202ENST00000341753 GBF1Q92538 1859 aa21.83■■□□□ 1.08
TRIM28-202ENST00000341753 RECQL5O94762 991 aaPredicted RBP21.82■■□□□ 1.08
TRIM28-202ENST00000341753 LPOP22079 712 aaPredicted RBP21.82■■□□□ 1.08
TRIM28-202ENST00000341753 HOXA9P31269 272 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 TTPAP49638 278 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 CLCN7P51798 805 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 MVKQ03426 396 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 PCBP2Q15366 365 aaKnown RBP eCLIP21.82■■□□□ 1.086e-9■■■■□ 22.7
TRIM28-202ENST00000341753 CACHD1Q5VU97 1274 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 CCSAPQ6IQ19 270 aaPredicted RBP21.82■■□□□ 1.08
TRIM28-202ENST00000341753 CYP2U1Q7Z449 544 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 SVOPQ8N4V2 548 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 SH3GL1Q99961 368 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 CPPED1Q9BRF8 314 aaPredicted RBP21.82■■□□□ 1.08
TRIM28-202ENST00000341753 TP63Q9H3D4 680 aaPredicted RBP21.82■■□□□ 1.08
TRIM28-202ENST00000341753 CLMPQ9H6B4 373 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 MAGIXQ9H6Y5 334 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 LRTM1Q9HBL6 345 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 PCDHB8Q9UN66 801 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 SCML2Q9UQR0 700 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 NUP214P35658 2090 aaPredicted RBP21.82■■□□□ 1.08
TRIM28-202ENST00000341753 PATJQ8NI35 1801 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 A0A096LPI6 279 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 OR2A25A4D2G3 310 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 FAM47E-STBD1D6RA91 191 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 NUAK1O60285 661 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 IL6P05231 212 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 C21orf33P30042 268 aaPredicted RBP21.82■■□□□ 1.08
TRIM28-202ENST00000341753 ZNF404Q494X3 552 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 ATG16L2Q8NAA4 619 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 KCNJ9Q92806 393 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 CPNE5Q9HCH3 593 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 KIF17Q9P2E2 1029 aa21.82■■□□□ 1.08
TRIM28-202ENST00000341753 TMEM88BA6NKF7 163 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 FAM220BPB1ANY3 271 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 STX7O15400 261 aaKnown RBP21.81■■□□□ 1.08
TRIM28-202ENST00000341753 ASNA1O43681 348 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 S100A1P23297 94 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 HOXD9P28356 352 aaPredicted RBP21.81■■□□□ 1.08
TRIM28-202ENST00000341753 GNPDA1P46926 289 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 GZMMP51124 257 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 OR2T5Q6IEZ7 315 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 MBOAT1Q6ZNC8 495 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 OR2T29Q8NH02 315 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 PROX1Q92786 737 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 TSSK3Q96PN8 268 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 APOL4Q9BPW4 351 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 RIMKLBQ9ULI2 386 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 DLGAP4Q9Y2H0 992 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 TRBV5-3A0A0A0MS03 114 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 LOC100506127A0A0U1RQW1 187 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 MOXD2PA6NHM9 499 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 AIREO43918 545 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 PCDHGA12O60330 932 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 CKBP12277 381 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 ALOX12P18054 663 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 GADD45AP24522 165 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 KCNQ1P51787 676 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 DOK6Q6PKX4 331 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 TXNDC15Q96J42 360 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 CRISPLD1Q9H336 500 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 SIRT5Q9NXA8 310 aa21.81■■□□□ 1.08
TRIM28-202ENST00000341753 DRGXA6NNA5 263 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 ULK1O75385 1050 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 WBP4O75554 376 aaKnown RBP21.8■■□□□ 1.08
TRIM28-202ENST00000341753 BCKDHAP12694 445 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 CDC20Q12834 499 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 KDM4DQ6B0I6 523 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 THOC7Q6I9Y2 204 aaKnown RBP21.8■■□□□ 1.08
TRIM28-202ENST00000341753 HEATR4Q86WZ0 1026 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 CALHM3Q86XJ0 350 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 CCDC103Q8IW40 242 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 DNASE1L2Q92874 299 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 MGME1Q9BQP7 344 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 SP140LQ9H930 580 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 RNF186Q9NXI6 227 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 GPRC5BQ9NZH0 403 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 NT5C1B-RDH14C9J2C7 533 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 SSX4O60224 188 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 DNTTP04053 509 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 TYMPP19971 482 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 COPZ1P61923 177 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 VLDLRP98155 873 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 FAM171A1Q5VUB5 890 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 ATG9BQ674R7 924 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 PRSS48Q7RTY5 328 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 LKAAEAR1Q8TD35 194 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 NDEL1Q9GZM8 345 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms