RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 AMD1P17707 334 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 WNT3AP56704 352 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 IRF2BP2Q7Z5L9 587 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 PDZD9Q8IXQ8 264 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 CEP295NLQ96MC4 621 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 HACL1Q9UJ83 578 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 NCK1P16333 377 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 CDK2P24941 298 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 ACTC1P68032 377 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 ACTA1P68133 377 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 OR2AJ1Q8NGZ0 328 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 C5orf34Q96MH7 638 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 CCDC106Q9BWC9 280 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 ASF1AQ9Y294 204 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 A0A075B6Q4 140 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 GTPBP3Q969Y2 492 aaKnown RBP14□□□□□ -0.17
COL7A1-201ENST00000328333 OR2AG2A6NM03 316 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 ZSCAN5DPP0CG00 497 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 HK1P19367 917 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 ATP5A1P25705 553 aaKnown RBP14□□□□□ -0.17
COL7A1-201ENST00000328333 SMARCD3Q6STE5 483 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 AVL9Q8NBF6 648 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 PIWIL1Q96J94 861 aaKnown RBP14□□□□□ -0.17
COL7A1-201ENST00000328333 PREBQ9HCU5 417 aa14□□□□□ -0.17
COL7A1-201ENST00000328333 GJA1P17302 382 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 NSG1P42857 185 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 PTPN9P43378 593 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 POU4F2Q12837 409 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 NCEH1Q6PIU2 408 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 FAM151BQ6UXP7 276 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 MTMR9Q96QG7 549 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 TAS2R14Q9NYV8 317 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 WASF2Q9Y6W5 498 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 WEE1P30291 646 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 RFX5P48382 616 aaPredicted RBP13.99□□□□□ -0.17
COL7A1-201ENST00000328333 TLE3Q04726 772 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 BTBD16Q32M84 506 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 TBRG1Q3YBR2 411 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 FBXO16Q8IX29 292 aaPredicted RBP13.99□□□□□ -0.17
COL7A1-201ENST00000328333 IRGQQ8WZA9 623 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 RBM18Q96H35 190 aaKnown RBP13.99□□□□□ -0.17
COL7A1-201ENST00000328333 GLOD4Q9HC38 313 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 SLC7A8Q9UHI5 535 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 C3P01024 1663 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 TP53BP1Q12888 1972 aaPredicted RBP13.99□□□□□ -0.17
COL7A1-201ENST00000328333 MT-ND2P03891 347 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 IL12BP29460 328 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 CDKN2CP42773 168 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 ZNF132P52740 706 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 NOMO3P69849 1222 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 PRPF38BQ5VTL8 546 aaKnown RBP13.99□□□□□ -0.17
COL7A1-201ENST00000328333 C3orf67Q6ZVT6 689 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 CMC1Q7Z7K0 106 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 MON1AQ86VX9 555 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 ZNF565Q8N9K5 539 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 SHKBP1Q8TBC3 707 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 LRRC58Q96CX6 371 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 P2RY11Q96G91 374 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 SLC25A51Q9H1U9 297 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 ZSCAN5BA6NJL1 495 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 MAD2L1BPQ15013 274 aaPredicted RBP13.99□□□□□ -0.17
COL7A1-201ENST00000328333 NOL9Q5SY16 702 aaKnown RBP13.99□□□□□ -0.17
COL7A1-201ENST00000328333 CLEC10AQ8IUN9 316 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 COX18Q8N8Q8 333 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 TERB2Q8NHR7 220 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 TMEM209Q96SK2 561 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 OSMRQ99650 979 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 CDT1Q9H211 546 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 SNTG2Q9NY99 539 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 WASF3Q9UPY6 502 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 TTC34A8MYJ7 566 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 ARPC2O15144 300 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 RPL7AP62424 266 aaKnown RBP13.99□□□□□ -0.17
COL7A1-201ENST00000328333 FKBP1CQ5VVH2 108 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 ZNF781Q8N8C0 355 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 LRRC57Q8N9N7 239 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 TSPEARQ8WU66 669 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 XAGE5Q8WWM1 108 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 PCDHB18PQ96TA0 734 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 EPYCQ99645 322 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 FANCFQ9NPI8 374 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 P2RX2Q9UBL9 471 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 SLC18A2Q05940 514 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 ZNF155Q12901 538 aaPredicted RBP13.99□□□□□ -0.17
COL7A1-201ENST00000328333 ABRAXAS2Q15018 415 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 HSDL1Q3SXM5 330 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 ZACNQ401N2 412 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 RNASE12Q5GAN4 147 aaKnown RBP13.99□□□□□ -0.17
COL7A1-201ENST00000328333 ALDH16A1Q8IZ83 802 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 VANGL1Q8TAA9 524 aaPredicted RBP13.99□□□□□ -0.17
COL7A1-201ENST00000328333 CIDECQ96AQ7 238 aaPredicted RBP13.99□□□□□ -0.17
COL7A1-201ENST00000328333 TSSK3Q96PN8 268 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 DEFB129Q9H1M3 183 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 IPPKQ9H8X2 491 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 ITM2CQ9NQX7 267 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 TRAPPC13A5PLN9 417 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 ZNF705EA8MWA4 302 aaPredicted RBP13.99□□□□□ -0.17
COL7A1-201ENST00000328333 SPTLC1O15269 473 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 ALPPP05187 535 aa13.99□□□□□ -0.17
COL7A1-201ENST00000328333 GK3PQ14409 553 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms