RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 SNAPC5O75971 98 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 CLIC3O95833 236 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 ITGB1P05556 798 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 KCNE1P15382 129 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 ITPKAP23677 461 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 OGDHQ02218 1023 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 RPL6Q02878 288 aaKnown RBP11.26□□□□□ -0.61
VPS39-201ENST00000318006 RAPSNQ13702 412 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 OGFRL1Q5TC84 451 aaPredicted RBP11.26□□□□□ -0.61
VPS39-201ENST00000318006 LINGO2Q7L985 606 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 IFNL1Q8IU54 200 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 COLGALT2Q8IYK4 626 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 LMO3Q8TAP4 145 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 SNX33Q8WV41 574 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 KCTD13Q8WZ19 329 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 EFHD2Q96C19 240 aaPredicted RBP11.26□□□□□ -0.61
VPS39-201ENST00000318006 BIRC7Q96CA5 298 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 ZNF641Q96N77 438 aaPredicted RBP11.26□□□□□ -0.61
VPS39-201ENST00000318006 ADAMTS10Q9H324 1103 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 C3orf14Q9HBI5 128 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 PIGVQ9NUD9 493 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 MIOSQ9NXC5 875 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 CKLFQ9UBR5 152 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 A0A1W2PQ67 120 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 A8MV72 311 aaPredicted RBP11.26□□□□□ -0.61
VPS39-201ENST00000318006 PITPNM1O00562 1244 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 DLGAP1O14490 977 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 HOXD12P35452 270 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 SPAM1P38567 509 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 MAPK9P45984 424 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 SKP1P63208 163 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 PCDH1Q08174 1060 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 PDE12Q6L8Q7 609 aaKnown RBP11.26□□□□□ -0.61
VPS39-201ENST00000318006 AMIGO1Q86WK6 493 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 SCML4Q8N228 414 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 XAGE5Q8WWM1 108 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 DDX1Q92499 740 aaKnown RBP11.26□□□□□ -0.61
VPS39-201ENST00000318006 FCRL5Q96RD9 977 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 MIPEPQ99797 713 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 MGME1Q9BQP7 344 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 ZIM2Q9NZV7 527 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 SLC17A6Q9P2U8 582 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 ARPC4-TTLL3A0A0A6YYG9 625 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 OR2AT4A6NND4 320 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 MAGEB3O15480 346 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 MYCLP1P12525 358 aaPredicted RBP11.26□□□□□ -0.61
VPS39-201ENST00000318006 FOSL2P15408 326 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 SLC1A2P43004 574 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 ARSFP54793 590 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 AP1S1P61966 158 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 SLC25A11Q02978 314 aaKnown RBP11.26□□□□□ -0.61
VPS39-201ENST00000318006 GRB14Q14449 540 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 DPY19L1Q2PZI1 675 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 ZNF792Q3KQV3 632 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 NCBP2-AS2Q69YL0 99 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 FBXO22Q8NEZ5 403 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 NPLOC4Q8TAT6 608 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 PLD4Q96BZ4 506 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 MSANTD3Q96H12 275 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 TFB2MQ9H5Q4 396 aaKnown RBP11.26□□□□□ -0.61
VPS39-201ENST00000318006 POLE4Q9NR33 117 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 SIX4Q9UIU6 781 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 ASF1AQ9Y294 204 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 NR2E3Q9Y5X4 410 aa11.26□□□□□ -0.61
VPS39-201ENST00000318006 CICQ96RK0 1608 aaPredicted RBP11.26□□□□□ -0.61
VPS39-201ENST00000318006 SLC38A8A6NNN8 435 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 H3BM21 787 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 TEX28O15482 410 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 INHAP05111 366 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 MSL3P1P0C860 447 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 IL7P13232 177 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 INCA1Q0VD86 236 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 ADAM15Q13444 863 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 ULK3Q6PHR2 472 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 DNAJB7Q7Z6W7 309 aaPredicted RBP11.25□□□□□ -0.61
VPS39-201ENST00000318006 BRSK1Q8TDC3 778 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 PIGKQ92643 395 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 MND1Q9BWT6 205 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 IL1RAPQ9NPH3 570 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 PAQR5Q9NXK6 330 aaPredicted RBP11.25□□□□□ -0.61
VPS39-201ENST00000318006 POFUT2Q9Y2G5 429 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 RIIAD1A6NNX1 92 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 C12orf71A8MTZ7 269 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 TEX46H3BTG2 121 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 DLX3O60479 287 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 RFPL2O75678 378 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 F2P00734 622 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 MATN1P21941 496 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 PRKCHP24723 683 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 NRLP54845 237 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 DSC3Q14574 896 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 PCLAFQ15004 111 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 MSS51Q4VC12 460 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 TMEM236Q5W0B7 351 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 FAM171BQ6P995 826 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 PM20D2Q8IYS1 436 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 ZBTB2Q8N680 514 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 PIGXQ8TBF5 258 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 POLR2J3Q9H1A7 115 aaKnown RBP11.25□□□□□ -0.61
VPS39-201ENST00000318006 EBF1Q9UH73 591 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms