RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 SPATA7Q9P0W8 599 aa13.68□□□□□ -0.22
SS18-201ENST00000269137 PCOLCE2Q9UKZ9 415 aa13.68□□□□□ -0.22
SS18-201ENST00000269137 NCOR1O75376 2440 aa13.68□□□□□ -0.22
SS18-201ENST00000269137 CFAP73A6NFT4 308 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 ZNF839A8K0R7 811 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 K7ESF4 209 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 PI15O43692 258 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 DCNP07585 359 aaKnown RBP13.67□□□□□ -0.22
SS18-201ENST00000269137 JUPP14923 745 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 NPPBP16860 134 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 GNAZP19086 355 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 CD27P26842 260 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 PIK3R1P27986 724 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 PXNP49023 591 aaPredicted RBP13.67□□□□□ -0.22
SS18-201ENST00000269137 TBPL1P62380 186 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 IRF8Q02556 426 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 CHIT1Q13231 466 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 CLCA4Q14CN2 919 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 ABRAXAS2Q15018 415 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 HERC3Q15034 1050 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 PPFIBP2Q8ND30 876 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 OR2T11Q8NH01 316 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 MENTQ9BUN1 341 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 MVB12BQ9H7P6 319 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 PNMA8BQ9ULN7 279 aaPredicted RBP13.67□□□□□ -0.22
SS18-201ENST00000269137 G3BP2Q9UN86 482 aaKnown RBP13.67□□□□□ -0.22
SS18-201ENST00000269137 SNX6Q9UNH7 406 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 CCL27Q9Y4X3 112 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 HEBP2Q9Y5Z4 205 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 CFAP20Q9Y6A4 193 aaKnown RBP13.67□□□□□ -0.22
SS18-201ENST00000269137 LRP4O75096 1905 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 PCM1Q15154 2024 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 SPTY2D1-AS1A0A0U1RR47 76 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 SERTM1A2A2V5 107 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 PDZK1P1A8MUH7 402 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 SLC28A1O00337 649 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 FFAR3O14843 346 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 CLGNO14967 610 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 AXIN1O15169 862 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 GPR42O15529 346 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 ALDOCP09972 364 aaKnown RBP13.67□□□□□ -0.22
SS18-201ENST00000269137 HNF4AP41235 474 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 MRPL19P49406 292 aaKnown RBP13.67□□□□□ -0.22
SS18-201ENST00000269137 ZNF33BQ06732 778 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 PRKG2Q13237 762 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 CPSF6Q16630 551 aaKnown RBP eCLIP13.67□□□□□ -0.22
SS18-201ENST00000269137 GSTA3Q16772 222 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 SCIMPQ6UWF3 145 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 SLC36A4Q6YBV0 504 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 RD3Q7Z3Z2 195 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 MYLK4Q86YV6 388 aaPredicted RBP13.67□□□□□ -0.22
SS18-201ENST00000269137 DCP2Q8IU60 420 aaKnown RBP13.67□□□□□ -0.22
SS18-201ENST00000269137 SFRP1Q8N474 314 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 WDR34Q96EX3 536 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 MARK4Q96L34 752 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 FERD3LQ96RJ6 166 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 TMEM168Q9H0V1 697 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 CCDC177Q9NQR7 707 aaPredicted RBP13.67□□□□□ -0.22
SS18-201ENST00000269137 PRDM8Q9NQV8 689 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 DLGAP2Q9P1A6 1054 aa13.67□□□□□ -0.22
SS18-201ENST00000269137 TDRKHQ9Y2W6 561 aaKnown RBP13.67□□□□□ -0.22
SS18-201ENST00000269137 E7EQ34 232 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 H0YHG0 523 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 RGS14O43566 566 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 TNFP01375 233 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 THEGLP0DJG4 465 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 THRAP10827 490 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 COX4I1P13073 169 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 HOXA6P31267 233 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 HALP42357 657 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 ACADVLP49748 655 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 GRIK2Q13002 908 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 DOC2AQ14183 400 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 FASTKQ14296 549 aaKnown RBP13.66□□□□□ -0.22
SS18-201ENST00000269137 ZRSR2Q15696 482 aaKnown RBP13.66□□□□□ -0.22
SS18-201ENST00000269137 RPE65Q16518 533 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 SMU1Q2TAY7 513 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 ATP6AP1LQ52LC2 224 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 XKR6Q5GH73 641 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 C6orf136Q5SQH8 315 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 SLCO4C1Q6ZQN7 724 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 PACS2Q86VP3 889 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 HID1Q8IV36 788 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 RAB42Q8N4Z0 105 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 MFSD2AQ8NA29 543 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 RP9Q8TA86 221 aaKnown RBP13.66□□□□□ -0.22
SS18-201ENST00000269137 SNX19Q92543 992 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 KLHDC7BQ96G42 594 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 SPACA7Q96KW9 195 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 PPP3R2Q96LZ3 170 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 CAMK1GQ96NX5 476 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 BTBD10Q9BSF8 475 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 EHD1Q9H4M9 534 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 IMP3Q9NV31 184 aaKnown RBP13.66□□□□□ -0.22
SS18-201ENST00000269137 TBC1D29Q9UFV1 150 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 GIMAP2Q9UG22 337 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 ZNF490Q9ULM2 529 aaPredicted RBP13.66□□□□□ -0.22
SS18-201ENST00000269137 DYRK1BQ9Y463 629 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 CACNA1IQ9P0X4 2223 aa13.66□□□□□ -0.22
SS18-201ENST00000269137 B2RBV5 119 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms