RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 C6orf106Q9H6K1 298 aaPredicted RBP16.01■□□□□ 0.15
USP4-201ENST00000265560 LMAN1LQ9HAT1 526 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 TRPV5Q9NQA5 729 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 ADA2Q9NZK5 511 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 PNMA8BQ9ULN7 279 aaPredicted RBP16.01■□□□□ 0.15
USP4-201ENST00000265560 MMP17Q9ULZ9 603 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 SLCO1B1Q9Y6L6 691 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 SLC16A5O15375 505 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 AK4P27144 223 aaPredicted RBP16.01■□□□□ 0.15
USP4-201ENST00000265560 DGKQP52824 942 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 DOC2AQ14183 400 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 ZNF542PQ5EBM4 170 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 ENPP7Q6UWV6 458 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 LRRC70Q7Z2Q7 622 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 TMPRSS11BQ86T26 416 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 KCNV2Q8TDN2 545 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 BTBD1Q9H0C5 482 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 XKR8Q9H6D3 395 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 PRDM8Q9NQV8 689 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 RIC8BQ9NVN3 520 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 CABIN1Q9Y6J0 2220 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 HEATR5BQ9P2D3 2071 aa16■□□□□ 0.15
USP4-201ENST00000265560 PRR35P0CG20 571 aa16■□□□□ 0.15
USP4-201ENST00000265560 SRFP11831 508 aa16■□□□□ 0.15
USP4-201ENST00000265560 CDKL1Q00532 357 aa16■□□□□ 0.15
USP4-201ENST00000265560 EOGTQ5NDL2 527 aa16■□□□□ 0.15
USP4-201ENST00000265560 GUCD1Q96NT3 240 aa16■□□□□ 0.15
USP4-201ENST00000265560 CARS2Q9HA77 564 aaKnown RBP16■□□□□ 0.15
USP4-201ENST00000265560 CCL27Q9Y4X3 112 aa16■□□□□ 0.15
USP4-201ENST00000265560 STK25O00506 426 aa16■□□□□ 0.15
USP4-201ENST00000265560 MRASO14807 208 aa16■□□□□ 0.15
USP4-201ENST00000265560 PSMB5P28074 263 aa16■□□□□ 0.15
USP4-201ENST00000265560 THOP1P52888 689 aa16■□□□□ 0.15
USP4-201ENST00000265560 CDC16Q13042 620 aa16■□□□□ 0.15
USP4-201ENST00000265560 TIGD2Q4W5G0 525 aa16■□□□□ 0.15
USP4-201ENST00000265560 RASGRP3Q8IV61 690 aa16■□□□□ 0.15
USP4-201ENST00000265560 KRTCAP2Q8N6L1 136 aa16■□□□□ 0.15
USP4-201ENST00000265560 ZNF740Q8NDX6 193 aa16■□□□□ 0.15
USP4-201ENST00000265560 TACO1Q9BSH4 297 aaKnown RBP16■□□□□ 0.15
USP4-201ENST00000265560 SDR39U1Q9NRG7 319 aaPredicted RBP16■□□□□ 0.15
USP4-201ENST00000265560 PDZK1P1A8MUH7 402 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 NRP2O60462 931 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 WFS1O76024 890 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 MYCLP1P12525 358 aaPredicted RBP15.99■□□□□ 0.15
USP4-201ENST00000265560 ERVK-8P63133 956 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 KIAA1161Q6NSJ0 714 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 DEFB123Q8N688 67 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 LINC00615Q96LM1 132 aaPredicted RBP15.99■□□□□ 0.15
USP4-201ENST00000265560 C12orf66Q96MD2 445 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 AIG1Q9NVV5 245 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 E7ENX8 843 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 PRDX6P30041 224 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 METRNLQ641Q3 311 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 TCAIMQ8N3R3 496 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 OR9A1PQ8NGU1 263 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 CDC26Q8NHZ8 85 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 PROKR1Q8TCW9 393 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 BMFQ96LC9 184 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 EBPLQ9BY08 206 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 LRATO95237 230 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 EML2O95834 649 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 CHRNB1P11230 501 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 PCNAP12004 261 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 IDO1P14902 403 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 TAP2Q03519 686 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 CEACAM7Q14002 265 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 MLF2Q15773 248 aaPredicted RBP15.99■□□□□ 0.15
USP4-201ENST00000265560 CCDC6Q16204 474 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 KIRREL3Q8IZU9 778 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 SNX19Q92543 992 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 APIPQ96GX9 242 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 EGLN2Q96KS0 407 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 INSM2Q96T92 566 aaPredicted RBP15.99■□□□□ 0.15
USP4-201ENST00000265560 SPNS1Q9H2V7 528 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 ACTL8Q9H568 366 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 DLGAP4Q9Y2H0 992 aa15.99■□□□□ 0.15
USP4-201ENST00000265560 C17orf113A0A1B0GUU1 675 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 ARHGAP10A1A4S6 786 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 KRBA1A5PL33 1030 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 KMOO15229 486 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 B3GALT4O96024 378 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 KRT6AP02538 564 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 KRT6BP04259 564 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 SLC35G4P0C7Q5 338 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 NPPBP16860 134 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 TACR1P25103 407 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 KRT6CP48668 564 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 CLCA4Q14CN2 919 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 CYP20A1Q6UW02 462 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 PDZD3Q86UT5 571 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 GALNT13Q8IUC8 556 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 TOE1Q96GM8 510 aaKnown RBP15.98■□□□□ 0.15
USP4-201ENST00000265560 FERD3LQ96RJ6 166 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 PIF1Q9H611 641 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 MAP10Q9P2G4 905 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 TRPS1Q9UHF7 1281 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 KCNE1BA0A087WTH5 132 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 KANSL1LA0AUZ9 987 aa15.98■□□□□ 0.15
USP4-201ENST00000265560 SAP18O00422 153 aaKnown RBP15.98■□□□□ 0.15
USP4-201ENST00000265560 SLC22A3O75751 556 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms