RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 IKQ13123 557 aaPredicted RBP2.21□□□□□ -2.06
SCN1A-208ENST00000625916 EFTUD2Q15029 972 aaKnown RBP eCLIP2.21□□□□□ -2.06
SCN1A-208ENST00000625916 TBCEQ15813 527 aaPredicted RBP2.21□□□□□ -2.06
SCN1A-208ENST00000625916 DMKNQ6E0U4 476 aaPredicted RBP2.21□□□□□ -2.06
SCN1A-208ENST00000625916 NCEH1Q6PIU2 408 aa2.21□□□□□ -2.06
SCN1A-208ENST00000625916 TEX11Q8IYF3 940 aa2.21□□□□□ -2.06
SCN1A-208ENST00000625916 OR5M8Q8NGP6 311 aa2.21□□□□□ -2.06
SCN1A-208ENST00000625916 RHOXF1Q8NHV9 184 aa2.21□□□□□ -2.06
SCN1A-208ENST00000625916 OR6C1Q96RD1 312 aa2.21□□□□□ -2.06
SCN1A-208ENST00000625916 C16orf70Q9BSU1 422 aa2.21□□□□□ -2.06
SCN1A-208ENST00000625916 SHARPINQ9H0F6 387 aa2.21□□□□□ -2.06
SCN1A-208ENST00000625916 PREBQ9HCU5 417 aa2.21□□□□□ -2.06
SCN1A-208ENST00000625916 TNFRSF19Q9NS68 423 aa2.21□□□□□ -2.06
SCN1A-208ENST00000625916 OSER1Q9NX31 292 aa2.21□□□□□ -2.06
SCN1A-208ENST00000625916 STYXL1Q9Y6J8 313 aa2.21□□□□□ -2.06
SCN1A-208ENST00000625916 LRCH4O75427 683 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 CDH3P22223 829 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 LMAN1P49257 510 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 CLCN4P51793 760 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 CASP6P55212 293 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 XGP55808 180 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 CSNK2BP67870 215 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 HERC3Q15034 1050 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 C3AR1Q16581 482 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 FAM98BQ52LJ0 330 aaKnown RBP2.2□□□□□ -2.06
SCN1A-208ENST00000625916 G2E3Q7L622 706 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 HAUS6Q7Z4H7 955 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 CPLX4Q7Z7G2 160 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 FAM131BQ86XD5 332 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 ZFAND4Q86XD8 727 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 AFAP1Q8N556 730 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 KLHDC1Q8N7A1 406 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 POMGNT1Q8WZA1 660 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 SERAC1Q96JX3 654 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 ZNF597Q96LX8 424 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 BTBD10Q9BSF8 475 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 CHCHD5Q9BSY4 110 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 FNDC11Q9BVV2 318 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 MIS12Q9H081 205 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 THAP2Q9H0W7 228 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 SLITRK2Q9H156 845 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 SPHK1Q9NYA1 384 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 DAPK2Q9UIK4 370 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 TSPAN16Q9UKR8 245 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 NTNG1Q9Y2I2 539 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 WIPI2Q9Y4P8 454 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 KIF25-AS1Q9Y6Z4 181 aa2.2□□□□□ -2.06
SCN1A-208ENST00000625916 ZNF840PA6NDX5 716 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 A6NLC8 198 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 PHF1O43189 567 aaPredicted RBP2.19□□□□□ -2.06
SCN1A-208ENST00000625916 TPPPO94811 219 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 DDHD2O94830 711 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 TRUB2O95900 331 aaKnown RBP2.19□□□□□ -2.06
SCN1A-208ENST00000625916 CLEC3BP05452 202 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 HSPA1AP0DMV8 641 aaKnown RBP2.19□□□□□ -2.06
SCN1A-208ENST00000625916 HSPA1BP0DMV9 641 aaKnown RBP2.19□□□□□ -2.06
SCN1A-208ENST00000625916 CDH2P19022 906 aaPredicted RBP2.19□□□□□ -2.06
SCN1A-208ENST00000625916 PPM1FP49593 454 aaPredicted RBP2.19□□□□□ -2.06
SCN1A-208ENST00000625916 CCR9P51686 369 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 TPD52P55327 224 aaPredicted RBP2.19□□□□□ -2.06
SCN1A-208ENST00000625916 NDPQ00604 133 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 GCNT1Q02742 428 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 ASTE1Q2TB18 679 aaPredicted RBP2.19□□□□□ -2.06
SCN1A-208ENST00000625916 JADE1Q6IE81 842 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 SARM1Q6SZW1 724 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 BAIAP2L2Q6UXY1 529 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 CLEC17AQ6ZS10 378 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 TIPARPQ7Z3E1 657 aaKnown RBP2.19□□□□□ -2.06
SCN1A-208ENST00000625916 ARHGAP24Q8N264 748 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 PDILTQ8N807 584 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 OR11H4Q8NGC9 324 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 CCDC107Q8WV48 283 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 APOBEC4Q8WW27 367 aaKnown RBP2.19□□□□□ -2.06
SCN1A-208ENST00000625916 LMF2Q9BU23 707 aaKnown RBP2.19□□□□□ -2.06
SCN1A-208ENST00000625916 DPAGT1Q9H3H5 408 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 SH2D4AQ9H788 454 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 FAM207AQ9NSI2 230 aaPredicted RBP2.19□□□□□ -2.06
SCN1A-208ENST00000625916 GTSE1Q9NYZ3 720 aa2.19□□□□□ -2.06
SCN1A-208ENST00000625916 C19orf25Q9UFG5 118 aaPredicted RBP2.19□□□□□ -2.06
SCN1A-208ENST00000625916 LRRFIP2Q9Y608 721 aaKnown RBP2.19□□□□□ -2.06
SCN1A-208ENST00000625916 TRIM49BA6NDI0 452 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 LIPT2A6NK58 231 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 ENO4A6NNW6 628 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 HAT1O14929 419 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 SLCO2B1O94956 709 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 PRKAR1AP10644 381 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 DARSP14868 501 aaKnown RBP2.18□□□□□ -2.06
SCN1A-208ENST00000625916 ZNF74Q16587 644 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 ODF4Q2M2E3 257 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 MS4A18Q3C1V0 323 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 PRR30Q53SZ7 412 aaPredicted RBP2.18□□□□□ -2.06
SCN1A-208ENST00000625916 ELFN2Q5R3F8 820 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 RSBN1Q5VWQ0 802 aaPredicted RBP2.18□□□□□ -2.06
SCN1A-208ENST00000625916 LCLAT1Q6UWP7 414 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 PP632Q6XCG6 107 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 ZER1Q7Z7L7 766 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 CD177Q8N6Q3 437 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 OR2AJ1Q8NGZ0 328 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 MOSPD2Q8NHP6 518 aa2.18□□□□□ -2.06
SCN1A-208ENST00000625916 CNRIP1Q96F85 164 aaPredicted RBP2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms