RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 FOXD2O60548 495 aaPredicted RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 SLC25A14O95258 325 aaPredicted RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 GNAO1P09471 354 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 RPL19P84098 196 aaKnown RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 KCNAB2Q13303 367 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 LARS2Q15031 903 aaKnown RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 VMACQ2NL98 169 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 C4orf46Q504U0 113 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 CYS1Q717R9 158 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 RNF44Q7L0R7 432 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 OR4K2Q8NGD2 314 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 THAP6Q8TBB0 222 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 RFT1Q96AA3 541 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 RAD51AP1Q96B01 352 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 CNDP2Q96KP4 475 aaKnown RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 SNX27Q96L92 541 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 CAMK1GQ96NX5 476 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 SPATA9Q9BWV2 254 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 FARSBQ9NSD9 589 aaKnown RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 NUDT15Q9NV35 164 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 MARK1Q9P0L2 795 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 DNMT3LQ9UJW3 386 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 PCDHB3Q9Y5E6 796 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 CLIC3O95833 236 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 RFC2P35250 354 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 CAMK1Q14012 370 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 PAN2Q504Q3 1202 aaKnown RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 CAPN13Q6MZZ7 669 aaPredicted RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 ZNF782Q6ZMW2 699 aaPredicted RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 AGMOQ6ZNB7 445 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 NOXA1Q86UR1 476 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 FAM46DQ8NEK8 389 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 B3GNT5Q9BYG0 378 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 FAM118AQ9NWS6 357 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 ZNF214Q9UL59 606 aaPredicted RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 RIMKLBQ9ULI2 386 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 SCN11AQ9UI33 1791 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 ZNF487B1APH4 448 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 M0R2N6 131 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 PRODHO43272 600 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 RAB36O95755 333 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 OPRL1P41146 370 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 GTF2A2P52657 109 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 CEACAM7Q14002 265 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 ZBTB6Q15916 424 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 NDUFA9Q16795 377 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 BAIAP2L2Q6UXY1 529 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 PIAS4Q8N2W9 510 aaPredicted RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 SCRN2Q96FV2 425 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 MYO19Q96H55 970 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 FUZQ9BT04 418 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 TCF7L1Q9HCS4 588 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 QPCTLQ9NXS2 382 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 EXOSC1Q9Y3B2 195 aaKnown RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 MYH15Q9Y2K3 1946 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 DAPL1A0PJW8 107 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 FOSL2P15408 326 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 RHOQP17081 205 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 PIK3CBP42338 1070 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 NDST2P52849 883 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 TARDBPQ13148 414 aaKnown RBP eCLIP8.73□□□□□ -1.012e-9■■■■■ 35.2
VCL-206ENST00000623461 SLC39A12Q504Y0 691 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 CELF3Q5SZQ8 465 aaKnown RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 APOBEC3HQ6NTF7 200 aaKnown RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 SLC2A7Q6PXP3 512 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 ZFPM1Q8IX07 1006 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 CHPT1Q8WUD6 406 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 TFAP2BQ92481 460 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 SH3YL1Q96HL8 342 aaPredicted RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 COMMD4Q9H0A8 199 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 MAGIXQ9H6Y5 334 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 APOBEC3GQ9HC16 384 aaKnown RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 ENAMQ9NRM1 1142 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 ZNF639Q9UID6 485 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 PPP1R11O60927 126 aaPredicted RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 CKMP06732 381 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 RPL9P32969 192 aaKnown RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 THPOP40225 353 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 PTGER3P43115 390 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 CBX5P45973 191 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 GDI2P50395 445 aaKnown RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 YBEYP58557 167 aaPredicted RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 ADAM8P78325 824 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 SLC25A11Q02978 314 aaKnown RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 PLD1Q13393 1074 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 LCN8Q6JVE9 175 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 HASPINQ8TF76 798 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 MAF1Q9H063 256 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 XPNPEP1Q9NQW7 623 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 TMLHEQ9NVH6 421 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 PIRTP0C851 137 aa8.72□□□□□ -1.01
VCL-206ENST00000623461 SMSP52788 366 aa8.72□□□□□ -1.01
VCL-206ENST00000623461 GBX2P52951 348 aaPredicted RBP8.72□□□□□ -1.01
VCL-206ENST00000623461 AP2S1P53680 142 aaPredicted RBP8.72□□□□□ -1.01
VCL-206ENST00000623461 RAPSNQ13702 412 aa8.72□□□□□ -1.01
VCL-206ENST00000623461 COQ5Q5HYK3 327 aa8.72□□□□□ -1.01
VCL-206ENST00000623461 SPPL2BQ8TCT7 592 aa8.72□□□□□ -1.01
VCL-206ENST00000623461 BRSK1Q8TDC3 778 aa8.72□□□□□ -1.01
VCL-206ENST00000623461 TRAPPC12Q8WVT3 735 aa8.72□□□□□ -1.01
VCL-206ENST00000623461 KAT2AQ92830 837 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms