RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 CCDC138Q96M89 665 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 GBP5Q96PP8 586 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 FAM129BQ96TA1 746 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 TRIT1Q9H3H1 467 aaKnown RBP15.32■□□□□ 0.04
CPSF1-213ENST00000620219 SPAG4Q9NPE6 437 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 DKK3Q9UBP4 350 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 TRPM6Q9BX84 2022 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 IL10P22301 178 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 CDC16Q13042 620 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 FAM174BQ3ZCQ3 159 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 KIAA1211LQ6NV74 962 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 KLHDC8BQ8IXV7 354 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 TBC1D19Q8N5T2 526 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 GPR174Q9BXC1 333 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 KLHL25Q9H0H3 589 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 TM7SF3Q9NS93 570 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 AOAHP28039 575 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 GRIA3P42263 894 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 SLBPQ14493 270 aaKnown RBP eCLIP15.31■□□□□ 0.04
CPSF1-213ENST00000620219 SBSNQ6UWP8 590 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 GCNT7Q6ZNI0 430 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 ACTRT2Q8TDY3 377 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 NAF1Q96HR8 494 aaKnown RBP15.31■□□□□ 0.04
CPSF1-213ENST00000620219 MCMBPQ9BTE3 642 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 COL4A6Q14031 1691 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 KELP23276 732 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 NAA20P61599 178 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 PRAMEF14Q5SWL7 426 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 TAF8Q7Z7C8 310 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 RNF175Q8N4F7 328 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 PNPT1Q8TCS8 783 aaKnown RBP15.31■□□□□ 0.04
CPSF1-213ENST00000620219 LEF1Q9UJU2 399 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-213ENST00000620219 CNTRLQ7Z7A1 2325 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 E7ENX8 843 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 LIN7AO14910 233 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-213ENST00000620219 C6orf136Q5SQH8 315 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 ZNF382Q96SR6 550 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 GDF15Q99988 308 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 NUSAP1Q9BXS6 441 aaKnown RBP15.31■□□□□ 0.04
CPSF1-213ENST00000620219 MMADHCQ9H3L0 296 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-213ENST00000620219 MBD1Q9UIS9 605 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-213ENST00000620219 ARHGEF33A8MVX0 844 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 VARSP26640 1264 aaKnown RBP15.31■□□□□ 0.04
CPSF1-213ENST00000620219 HNMTP50135 292 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 ERVK-8P63133 956 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 LRRC74AQ0VAA2 488 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 CCSMST1Q4G0I0 132 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 SAMD4BQ5PRF9 694 aaKnown RBP15.31■□□□□ 0.04
CPSF1-213ENST00000620219 DHFR2Q86XF0 187 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 ETFBKMTQ8IXQ9 262 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 FAM120BQ96EK7 910 aaKnown RBP15.31■□□□□ 0.04
CPSF1-213ENST00000620219 CAPN10Q9HC96 672 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 C1orf109Q9NX04 203 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 OBP2AQ9NY56 170 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 FADS3Q9Y5Q0 445 aa15.31■□□□□ 0.04
CPSF1-213ENST00000620219 ZNF839A8K0R7 811 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 KDM1AO60341 852 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 FKBP9O95302 570 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 C1orf61Q13536 156 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 WSCD2Q2TBF2 565 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 FRG2Q64ET8 278 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 CYP20A1Q6UW02 462 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 FKBP9P1Q75LS8 142 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 SPATA19Q7Z5L4 167 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 NRSN1Q8IZ57 195 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 HM13Q8TCT9 377 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 SDCCAG3Q96C92 435 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 FRG2BQ96QU4 278 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 LYSMD1Q96S90 227 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 RMND5AQ9H871 391 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 MED16Q9Y2X0 877 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 MYO10Q9HD67 2058 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 OR52A4PA6NMU1 304 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 C2CD4DB7Z1M9 353 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 MANBAO00462 879 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 DHDDSQ86SQ9 333 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 OR5AR1Q8NGP9 310 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 NUDT8Q8WV74 236 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 LCN9Q8WX39 176 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 HHIPQ96QV1 700 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 SERGEFQ9UGK8 458 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 MT-ND1P03886 318 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 ACTR3P61158 418 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 ILF3Q12906 894 aaKnown RBP eCLIP15.3■□□□□ 0.043e-6■■□□□ 11.7
CPSF1-213ENST00000620219 KRT78Q8N1N4 520 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 OR6Y1Q8NGX8 325 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 REPS1Q96D71 796 aa15.3■□□□□ 0.04
CPSF1-213ENST00000620219 OR1F1O43749 312 aa15.29■□□□□ 0.04
CPSF1-213ENST00000620219 RPS17P08708 135 aaKnown RBP15.29■□□□□ 0.04
CPSF1-213ENST00000620219 B4GALNT1Q00973 533 aa15.29■□□□□ 0.04
CPSF1-213ENST00000620219 HENMT1Q5T8I9 393 aaKnown RBP15.29■□□□□ 0.04
CPSF1-213ENST00000620219 MED27Q6P2C8 311 aa15.29■□□□□ 0.04
CPSF1-213ENST00000620219 GPR180Q86V85 440 aa15.29■□□□□ 0.04
CPSF1-213ENST00000620219 JADE3Q92613 823 aa15.29■□□□□ 0.04
CPSF1-213ENST00000620219 YIPF2Q9BWQ6 316 aa15.29■□□□□ 0.04
CPSF1-213ENST00000620219 RHBGQ9H310 441 aa15.29■□□□□ 0.04
CPSF1-213ENST00000620219 KMOO15229 486 aa15.29■□□□□ 0.04
CPSF1-213ENST00000620219 ZCCHC18P0CG32 403 aa15.29■□□□□ 0.04
CPSF1-213ENST00000620219 AKT2P31751 481 aa15.29■□□□□ 0.04
CPSF1-213ENST00000620219 GPC1P35052 558 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 136.4 ms