RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 TBC1D17Q9HA65 648 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 ZDHHC3Q9NYG2 299 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 FBXL21Q9UKT6 434 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 BTN3A3O00478 584 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 RLN1P04808 185 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 RPLP0P05388 317 aaKnown RBP13.72□□□□□ -0.21
CPSF1-212ENST00000616140 ENGP17813 658 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 ABATP80404 500 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 MS4A13Q5J8X5 152 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 MEIOBQ8N635 442 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 DENND1AQ8TEH3 1009 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 TAMM41Q96BW9 452 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 YIPF1Q9Y548 306 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 PCDHGA4Q9Y5G9 962 aa13.72□□□□□ -0.21
CPSF1-212ENST00000616140 AKAP12Q02952 1782 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 PIRO00625 290 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 DIRAS1O95057 198 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 CYP11A1P05108 521 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 GJA1P17302 382 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 PTX3P26022 381 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-212ENST00000616140 SLC10A2Q12908 348 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-212ENST00000616140 SERINC3Q13530 473 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 SUZ12Q15022 739 aaKnown RBP13.71□□□□□ -0.21
CPSF1-212ENST00000616140 PPP1R3AQ16821 1122 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 SMARCD3Q6STE5 483 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 BEND5Q7L4P6 421 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 PEG10Q86TG7 708 aaKnown RBP13.71□□□□□ -0.21
CPSF1-212ENST00000616140 CLIP4Q8N3C7 705 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 ZNF563Q8TA94 476 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 SH3RF2Q8TEC5 729 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 LCN9Q8WX39 176 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 TMEM165Q9HC07 324 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 SNTG1Q9NSN8 517 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 FLRT1Q9NZU1 646 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 MCIDASD6RGH6 385 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 FGF19O95750 216 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 ECDO95905 644 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-212ENST00000616140 ZNF24P17028 368 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 GMPRP36959 345 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 MNDAP41218 407 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 C1QTNF8P60827 252 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 SLBPQ14493 270 aaKnown RBP eCLIP13.71□□□□□ -0.21
CPSF1-212ENST00000616140 CRTC2Q53ET0 693 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-212ENST00000616140 OR2T5Q6IEZ7 315 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 C1orf52Q8N6N3 182 aaKnown RBP13.71□□□□□ -0.21
CPSF1-212ENST00000616140 OR2AP1Q8NGE2 309 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 OR2T29Q8NH02 315 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 STON2Q8WXE9 905 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 FCRL3Q96P31 734 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-212ENST00000616140 COL21A1Q96P44 957 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 MIPEPQ99797 713 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 DNAAF2Q9NVR5 837 aaKnown RBP13.71□□□□□ -0.21
CPSF1-212ENST00000616140 DUS2Q9NX74 493 aaKnown RBP13.71□□□□□ -0.21
CPSF1-212ENST00000616140 MTRRQ9UBK8 725 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 TELO2Q9Y4R8 837 aa13.71□□□□□ -0.21
CPSF1-212ENST00000616140 J3QRK9 145 aa13.71□□□□□ -0.22
CPSF1-212ENST00000616140 CCNDBP1O95273 360 aa13.71□□□□□ -0.22
CPSF1-212ENST00000616140 APODP05090 189 aa13.71□□□□□ -0.22
CPSF1-212ENST00000616140 AP1S2P56377 157 aa13.71□□□□□ -0.22
CPSF1-212ENST00000616140 TGFBIQ15582 683 aa13.71□□□□□ -0.22
CPSF1-212ENST00000616140 TIGD6Q17RP2 521 aa13.71□□□□□ -0.22
CPSF1-212ENST00000616140 C5orf22Q49AR2 442 aa13.71□□□□□ -0.22
CPSF1-212ENST00000616140 RPTNQ6XPR3 784 aa13.71□□□□□ -0.22
CPSF1-212ENST00000616140 C14orf80Q86SX3 495 aa13.71□□□□□ -0.22
CPSF1-212ENST00000616140 LGI4Q8N135 537 aa13.71□□□□□ -0.22
CPSF1-212ENST00000616140 PIGXQ8TBF5 258 aa13.71□□□□□ -0.22
CPSF1-212ENST00000616140 ZCCHC10Q8TBK6 192 aa13.71□□□□□ -0.22
CPSF1-212ENST00000616140 BIRC7Q96CA5 298 aa13.71□□□□□ -0.22
CPSF1-212ENST00000616140 FBXL8Q96CD0 374 aa13.71□□□□□ -0.22
CPSF1-212ENST00000616140 NFKBIL1Q9UBC1 381 aaPredicted RBP13.71□□□□□ -0.22
CPSF1-212ENST00000616140 SCML2Q9UQR0 700 aa13.71□□□□□ -0.22
CPSF1-212ENST00000616140 SLC35G6P0C7Q6 338 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 IL7RP16871 459 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 RAB25P57735 213 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 PTCHD3Q3KNS1 767 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 XKR5Q6UX68 686 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 OAFQ86UD1 273 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-212ENST00000616140 C2CD4AQ8NCU7 369 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-212ENST00000616140 RNASE11Q8TAA1 199 aaKnown RBP13.7□□□□□ -0.22
CPSF1-212ENST00000616140 SNX33Q8WV41 574 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 FCGR1BQ92637 280 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 RFKQ969G6 155 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 GFM1Q96RP9 751 aaKnown RBP13.7□□□□□ -0.22
CPSF1-212ENST00000616140 ZNF347Q96SE7 839 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 KCNS3Q9BQ31 491 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 EFCAB11Q9BUY7 163 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 OR51V1Q9H2C8 321 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 MARCH7Q9H992 704 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 ZNF487B1APH4 448 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 PDPK1O15530 556 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 C8BP07358 591 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 PTPN2P17706 415 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 MAT2AP31153 395 aaKnown RBP13.7□□□□□ -0.22
CPSF1-212ENST00000616140 NUDT6P53370 316 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 WNT7BP56706 349 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 BNC1Q01954 994 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 RAB6CQ53S08 254 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 AMZ2Q86W34 360 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 ZNF366Q8N895 744 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms