RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 OR2B3O76000 313 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 S1PR4O95977 384 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 FURINP09958 794 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 PKMP14618 531 aaKnown RBP14.72□□□□□ -0.05
TRIM28-203ENST00000593582 SF1Q15637 639 aaKnown RBP14.72□□□□□ -0.05
TRIM28-203ENST00000593582 LONRF1Q17RB8 773 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 DEFB110Q30KQ9 67 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 RNASEH2BQ5TBB1 312 aaKnown RBP14.72□□□□□ -0.05
TRIM28-203ENST00000593582 PRICKLE2Q7Z3G6 844 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 PCGF5Q86SE9 256 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 SYVN1Q86TM6 617 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 TAX1BP1Q86VP1 789 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 SYTL1Q8IYJ3 562 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 C2orf73Q8N5S3 287 aaPredicted RBP14.72□□□□□ -0.05
TRIM28-203ENST00000593582 ZBTB2Q8N680 514 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 CALML6Q8TD86 181 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 SLCO2A1Q92959 643 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 SIGLEC10Q96LC7 697 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 IL17FQ96PD4 163 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 RUFY1Q96T51 708 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 DPH2Q9BQC3 489 aaPredicted RBP14.72□□□□□ -0.05
TRIM28-203ENST00000593582 NLNQ9BYT8 704 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 CCDC68Q9H2F9 335 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 C20orf96Q9NUD7 363 aaPredicted RBP14.72□□□□□ -0.05
TRIM28-203ENST00000593582 PCMTD2Q9NV79 361 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 INTS7Q9NVH2 962 aaKnown RBP14.72□□□□□ -0.05
TRIM28-203ENST00000593582 IRAK4Q9NWZ3 460 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.72□□□□□ -0.05
TRIM28-203ENST00000593582 TSR3Q9UJK0 312 aaKnown RBP14.72□□□□□ -0.05
TRIM28-203ENST00000593582 RUVBL2Q9Y230 463 aaKnown RBP14.72□□□□□ -0.05
TRIM28-203ENST00000593582 KCNMB2Q9Y691 235 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 NFS1Q9Y697 457 aa14.72□□□□□ -0.05
TRIM28-203ENST00000593582 ZSCAN9O15535 394 aaPredicted RBP14.71□□□□□ -0.05
TRIM28-203ENST00000593582 SLC28A2O43868 658 aa14.71□□□□□ -0.05
TRIM28-203ENST00000593582 RAB40ALP0C0E4 278 aa14.71□□□□□ -0.05
TRIM28-203ENST00000593582 MAGP20916 626 aa14.71□□□□□ -0.05
TRIM28-203ENST00000593582 AGXTP21549 392 aa14.71□□□□□ -0.05
TRIM28-203ENST00000593582 RPS18P62269 152 aaKnown RBP14.71□□□□□ -0.05
TRIM28-203ENST00000593582 CTBP1Q13363 440 aa14.71□□□□□ -0.05
TRIM28-203ENST00000593582 PTK6Q13882 451 aa14.71□□□□□ -0.05
TRIM28-203ENST00000593582 GBX1Q14549 363 aa14.71□□□□□ -0.05
TRIM28-203ENST00000593582 UGT8Q16880 541 aa14.71□□□□□ -0.05
TRIM28-203ENST00000593582 PAPD7Q5XG87 772 aaKnown RBP14.71□□□□□ -0.05
TRIM28-203ENST00000593582 DENND6AQ8IWF6 608 aa14.71□□□□□ -0.05
TRIM28-203ENST00000593582 LMNTD2Q8IXW0 634 aa14.71□□□□□ -0.05
TRIM28-203ENST00000593582 C9orf43Q8TAL5 461 aaPredicted RBP14.71□□□□□ -0.05
TRIM28-203ENST00000593582 THAP4Q8WY91 577 aa14.71□□□□□ -0.05
TRIM28-203ENST00000593582 CAPZA3Q96KX2 299 aa14.71□□□□□ -0.05
TRIM28-203ENST00000593582 NAPGQ99747 312 aaPredicted RBP14.71□□□□□ -0.05
TRIM28-203ENST00000593582 FBXO6Q9NRD1 293 aaPredicted RBP14.71□□□□□ -0.05
TRIM28-203ENST00000593582 SNX7Q9UNH6 387 aa14.71□□□□□ -0.05
TRIM28-203ENST00000593582 PLCL2Q9UPR0 1127 aa14.71□□□□□ -0.05
TRIM28-203ENST00000593582 MAN2B2Q9Y2E5 1009 aa14.71□□□□□ -0.05
TRIM28-203ENST00000593582 SAR1BQ9Y6B6 198 aa14.71□□□□□ -0.05
TRIM28-203ENST00000593582 HELZ2Q9BYK8 2649 aaKnown RBP14.7□□□□□ -0.06
TRIM28-203ENST00000593582 C9J4A7 227 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 J3QKU1 62 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 DNALI1O14645 258 aaPredicted RBP14.7□□□□□ -0.06
TRIM28-203ENST00000593582 HCRTR1O43613 425 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 FKBP9O95302 570 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 MATN4O95460 622 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 PGAM1P18669 254 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 BDKRB1P46663 353 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 GABRA4P48169 554 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 PTCHD3Q3KNS1 767 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 TTLL9Q3SXZ7 439 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 LCN10Q6JVE6 187 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 TLDC1Q6P9B6 456 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 SYDE1Q6ZW31 735 aaPredicted RBP14.7□□□□□ -0.06
TRIM28-203ENST00000593582 CREG2Q8IUH2 290 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 FAM20CQ8IXL6 584 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 AGGF1Q8N302 714 aaeCLIP14.7□□□□□ -0.06
TRIM28-203ENST00000593582 DNAJC22Q8N4W6 341 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 ENDOVQ8N8Q3 282 aaKnown RBP14.7□□□□□ -0.06
TRIM28-203ENST00000593582 LMNTD1Q8N9Z9 388 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.7□□□□□ -0.062e-7■■■■■ 48.3
TRIM28-203ENST00000593582 GABPB2Q8TAK5 448 aaPredicted RBP14.7□□□□□ -0.06
TRIM28-203ENST00000593582 RUNDC3BQ96NL0 473 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 C17orf62Q9BQA9 187 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 FAM167BQ9BTA0 163 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 SPRTNQ9H040 489 aaPredicted RBP14.7□□□□□ -0.06
TRIM28-203ENST00000593582 KLHL42Q9P2K6 505 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 GALPQ9UBC7 116 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 KLHL20Q9Y2M5 609 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 COMMD10Q9Y6G5 202 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 FAM169AQ9Y6X4 670 aa14.7□□□□□ -0.06
TRIM28-203ENST00000593582 TLN1Q9Y490 2541 aaKnown RBP14.7□□□□□ -0.06
TRIM28-203ENST00000593582 SPTA1P02549 2419 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 MKRN2OSH3BPM6 223 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 TTC4O95801 387 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 SLC1A2P43004 574 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 CLCN7P51798 805 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 PMS2P54278 862 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 DR1Q01658 176 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 IL10RAQ13651 578 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 CRYMQ14894 314 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 KLHL38Q2WGJ6 581 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 CCSMST1Q4G0I0 132 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 HSP90AA5PQ58FG0 334 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 ACSBG2Q5FVE4 666 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms