RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 MAP3K13O43283 966 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 STK16O75716 305 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 ATXN8OSP0DMR3 200 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 KITP10721 976 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 IDSP22304 550 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 GNPDA1P46926 289 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 PIK3CGP48736 1102 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 SRP54P61011 504 aaKnown RBP13.1□□□□□ -0.31
VMP1-217ENST00000593168 SIM1P81133 766 aaPredicted RBP13.1□□□□□ -0.31
VMP1-217ENST00000593168 SF3A3Q12874 501 aaKnown RBP eCLIP13.1□□□□□ -0.31
VMP1-217ENST00000593168 LRP8Q14114 963 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.1□□□□□ -0.31
VMP1-217ENST00000593168 SLC23A3Q6PIS1 610 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 DCP2Q8IU60 420 aaKnown RBP13.1□□□□□ -0.31
VMP1-217ENST00000593168 SYT12Q8IV01 421 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 HOMEZQ8IX15 550 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 KLHDC8AQ8IYD2 350 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 CLYBLQ8N0X4 340 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 AFAP1L2Q8N4X5 818 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 OR13H1Q8NG92 308 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 TRPC4APQ8TEL6 797 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 STON2Q8WXE9 905 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 TFGQ92734 400 aaPredicted RBP13.1□□□□□ -0.31
VMP1-217ENST00000593168 ESAMQ96AP7 390 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 KLHDC7BQ96G42 594 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 TMEM79Q9BSE2 394 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 TMEM120AQ9BXJ8 343 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 ZBTB26Q9HCK0 441 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 TRNAU1APQ9NX07 287 aaKnown RBP13.1□□□□□ -0.31
VMP1-217ENST00000593168 KLQ9UEF7 1012 aa13.1□□□□□ -0.31
VMP1-217ENST00000593168 MARCOQ9UEW3 520 aaPredicted RBP13.1□□□□□ -0.31
VMP1-217ENST00000593168 EIF2B4Q9UI10 523 aaKnown RBP13.1□□□□□ -0.31
VMP1-217ENST00000593168 FASNP49327 2511 aaKnown RBP13.09□□□□□ -0.31
VMP1-217ENST00000593168 K7EPI3 171 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 MYO1CO00159 1063 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 IFRD1O00458 451 aaPredicted RBP13.09□□□□□ -0.31
VMP1-217ENST00000593168 UBFD1O14562 309 aaKnown RBP13.09□□□□□ -0.31
VMP1-217ENST00000593168 CAPNS1P04632 268 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 RPN2P04844 631 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 SLC35G4P0C7Q5 338 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 THEGLP0DJG4 465 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 ITPKAP23677 461 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 SLC6A12P48065 614 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 HSPA7P48741 367 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 AQP5P55064 265 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 SH3BP2P78314 561 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 RPL6Q02878 288 aaKnown RBP13.09□□□□□ -0.31
VMP1-217ENST00000593168 GTF2H2Q13888 395 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 ALG11Q2TAA5 492 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 C18orf21Q32NC0 220 aaPredicted RBP13.09□□□□□ -0.31
VMP1-217ENST00000593168 FBXO48Q5FWF7 155 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 SH2D4BQ5SQS7 431 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 PEAR1Q5VY43 1037 aaPredicted RBP13.09□□□□□ -0.31
VMP1-217ENST00000593168 GTF2H2CQ6P1K8 395 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 C6orf89Q6UWU4 347 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 WASH2PQ6VEQ5 465 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 RPS27LQ71UM5 84 aaKnown RBP13.09□□□□□ -0.31
VMP1-217ENST00000593168 LRRC70Q7Z2Q7 622 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 IQCHQ86VS3 1027 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 SPATS2Q86XZ4 545 aaKnown RBP13.09□□□□□ -0.31
VMP1-217ENST00000593168 MFSD2AQ8NA29 543 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 AGAP11Q8TF27 550 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 SNX19Q92543 992 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 RAD51AP1Q96B01 352 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 PDXPQ96GD0 296 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 NSUN5Q96P11 429 aaKnown RBP13.09□□□□□ -0.31
VMP1-217ENST00000593168 ZNF382Q96SR6 550 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 WWP1Q9H0M0 922 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 MID1IP1Q9NPA3 183 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 WASH6PQ9NQA3 447 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 DNAJC28Q9NX36 388 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 OPTCQ9UBM4 332 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 PILRBQ9UKJ0 227 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 APOBEC2Q9Y235 224 aaKnown RBP13.09□□□□□ -0.31
VMP1-217ENST00000593168 TRAF6Q9Y4K3 522 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 ASB1Q9Y576 335 aa13.09□□□□□ -0.31
VMP1-217ENST00000593168 ANKRD11Q6UB99 2663 aaPredicted RBP13.09□□□□□ -0.31
VMP1-217ENST00000593168 CACNA1EQ15878 2313 aa13.08□□□□□ -0.31
VMP1-217ENST00000593168 FREM2Q5SZK8 3169 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 SPTY2D1-AS1A0A0U1RR47 76 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 FAM221BA6H8Z2 402 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 PPP6CO00743 305 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 ESRRBO95718 433 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 TNFP01375 233 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 TSPAN8P19075 237 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 BDKRB1P46663 353 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 PKNOX1P55347 436 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 RACK1P63244 317 aaKnown RBP13.08□□□□□ -0.32
VMP1-217ENST00000593168 ZSCAN26Q16670 478 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 ZXDCQ2QGD7 858 aaPredicted RBP13.08□□□□□ -0.32
VMP1-217ENST00000593168 LYSMD4Q5XG99 296 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 EPGNQ6UW88 154 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 MBOAT1Q6ZNC8 495 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 MAVSQ7Z434 540 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 GOLGA7Q7Z5G4 137 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 DCUN1D3Q8IWE4 304 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 SLC22A18ASQ8N1D0 253 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 CHCHD4Q8N4Q1 142 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 TEX9Q8N6V9 391 aa13.08□□□□□ -0.32
VMP1-217ENST00000593168 SPDYE1Q8NFV5 336 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms