RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 OR7A17O14581 309 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 KMOO15229 486 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 ADAM23O75077 832 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 CLDN9O95484 217 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 KRT6AP02538 564 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 KRT6BP04259 564 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 RPN2P04844 631 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 JUNP05412 331 aaKnown RBP10.12□□□□□ -0.79
LIG3-203ENST00000585370 ACADMP11310 421 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 IDO1P14902 403 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 ZNF8P17098 575 aaPredicted RBP10.12□□□□□ -0.79
LIG3-203ENST00000585370 SLC6A12P48065 614 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 KRT6CP48668 564 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 RAP1GDS1P52306 607 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 DGKEP52429 567 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 ERVPABLB-1P60509 514 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 CDK3Q00526 305 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 ABRQ12979 859 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 TRAF3Q13114 568 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 MAD2L1Q13257 205 aaPredicted RBP10.12□□□□□ -0.79
LIG3-203ENST00000585370 RPS6KA2Q15349 733 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 GGTA1PQ4G0N0 100 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 XKR7Q5GH72 579 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 ZNF648Q5T619 568 aaPredicted RBP10.12□□□□□ -0.79
LIG3-203ENST00000585370 KIAA1211LQ6NV74 962 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 UNC5DQ6UXZ4 953 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 LRRTM4Q86VH4 590 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 AMZ2Q86W34 360 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 HORMAD1Q86X24 394 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 VRK3Q8IV63 474 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 CFAP206Q8IYR0 622 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 KYQ8NBH2 561 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 RBM15BQ8NDT2 890 aaKnown RBP10.12□□□□□ -0.79
LIG3-203ENST00000585370 PHC3Q8NDX5 983 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 TSTD1Q8NFU3 115 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 OR4F6Q8NGB9 312 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 OR14C36Q8NHC7 312 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 CFAP61Q8NHU2 1237 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 ESAMQ96AP7 390 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 TUBGCP3Q96CW5 907 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 PPP1R36Q96LQ0 422 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 PPP3R2Q96LZ3 170 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 TMEM79Q9BSE2 394 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 SLC25A23Q9BV35 468 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 SLC17A9Q9BYT1 436 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 MKRN2Q9H000 416 aaKnown RBP10.12□□□□□ -0.79
LIG3-203ENST00000585370 MRPL40Q9NQ50 206 aaKnown RBP10.12□□□□□ -0.79
LIG3-203ENST00000585370 DNAJC11Q9NVH1 559 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 MBD1Q9UIS9 605 aaPredicted RBP10.12□□□□□ -0.79
LIG3-203ENST00000585370 ST14Q9Y5Y6 855 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 CKAP5Q14008 2032 aa10.12□□□□□ -0.79
LIG3-203ENST00000585370 LOC100653049A0A140TA62 436 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 DYTNA2CJ06 578 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 BBIP1A8MTZ0 92 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 K7ESM1 405 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 TOR1BO14657 336 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 RGS14O43566 566 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 RNGTTO60942 597 aaKnown RBP10.11□□□□□ -0.79
LIG3-203ENST00000585370 ULK1O75385 1050 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 CIB2O75838 187 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 KRT34O76011 436 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 CAPN1P07384 714 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 SNRPB2P08579 225 aaKnown RBP10.11□□□□□ -0.79
LIG3-203ENST00000585370 LINC00032P0C843 101 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 PRR35P0CG20 571 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 BCKDHBP21953 392 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 CPOXP36551 454 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 HSD17B2P37059 387 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 ARL1P40616 181 aaPredicted RBP10.11□□□□□ -0.79
LIG3-203ENST00000585370 FOXA1P55317 472 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 ERVK-8P63133 956 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 ART3Q13508 389 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 PTK2BQ14289 1009 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 FASTKQ14296 549 aaKnown RBP10.11□□□□□ -0.79
LIG3-203ENST00000585370 TMEM259Q4ZIN3 620 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 USP39Q53GS9 565 aaKnown RBP10.11□□□□□ -0.79
LIG3-203ENST00000585370 LIPJQ5W064 366 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 TMEM198Q66K66 360 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 ANO7Q6IWH7 933 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 LETMD1Q6P1Q0 360 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 TMEM92Q6UXU6 159 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 TRIM46Q7Z4K8 759 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 HEATR4Q86WZ0 1026 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 SNX32Q86XE0 403 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 GALNT13Q8IUC8 556 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 SCUBE1Q8IWY4 988 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 FAM9CQ8IZT9 166 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 MIER2Q8N344 545 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 OXR1Q8N573 874 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 BEND7Q8N7W2 519 aaPredicted RBP10.11□□□□□ -0.79
LIG3-203ENST00000585370 CDYL2Q8N8U2 506 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 L3MBTL4Q8NA19 623 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 TP53I13Q8NBR0 393 aaPredicted RBP10.11□□□□□ -0.79
LIG3-203ENST00000585370 DENND6BQ8NEG7 585 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 NAT14Q8WUY8 206 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 UTP4Q969X6 686 aaKnown RBP10.11□□□□□ -0.79
LIG3-203ENST00000585370 C3orf30Q96M34 536 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 SERPINI1Q99574 410 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 MIPEPQ99797 713 aa10.11□□□□□ -0.79
LIG3-203ENST00000585370 MRPL1Q9BYD6 325 aaKnown RBP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms