RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 NHSL2Q5HYW2 709 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 MANEAQ5SRI9 462 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 UBAP2Q5T6F2 1119 aaKnown RBP1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 C20orf194Q5TEA3 1177 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 SIGIRRQ6IA17 410 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 SLC18B1Q6NT16 456 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 LCTLQ6UWM7 567 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 C16orf89Q6UX73 402 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 LRIG3Q6UXM1 1119 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 ZNF517Q6ZMY9 492 aaPredicted RBP1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 PRSS45Q7RTY3 260 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 ZNF589Q86UQ0 364 aaPredicted RBP1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 ANKRD13BQ86YJ7 626 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 THEM5Q8N1Q8 247 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 ELMOD1Q8N336 334 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 CARNMT1Q8N4J0 409 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 LINC01465Q8N7H1 131 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 BEST2Q8NFU1 509 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 MOSPD2Q8NHP6 518 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 UTP15Q8TED0 518 aaKnown RBP1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 CENPTQ96BT3 561 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 DYNLL2Q96FJ2 89 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 GFM1Q96RP9 751 aaKnown RBP1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 SMC6Q96SB8 1091 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 PCGF1Q9BSM1 259 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 ABCG4Q9H172 646 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 PORCNQ9H237 461 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 SNX25Q9H3E2 840 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 DHX33Q9H6R0 707 aaKnown RBP1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 PPANQ9NQ55 473 aaKnown RBP1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 HPF1Q9NWY4 346 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 LRWD1Q9UFC0 647 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 TMCC3Q9ULS5 477 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 UBQLN1Q9UMX0 589 aaKnown RBP1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 MYH15Q9Y2K3 1946 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 USP24Q9UPU5 2620 aa1.9□□□□□ -2.11
SMCHD1-211ENST00000584897 A0A1W2PRV1 198 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 LRRD1A4D1F6 860 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 URADA6NGE7 173 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 FAM90A20PA6NIJ5 464 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 LACTBL1A8MY62 500 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 PALM2-AKAP2B1ALY0 433 aaPredicted RBP1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 MBTPS2O43462 519 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 TADA2AO75478 443 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 GAS8O95995 478 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 SERPINC1P01008 464 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 EDN1P05305 212 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 NR2F1P10589 423 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 KCNE1P15382 129 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 PFKFB1P16118 471 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 TFEBP19484 476 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 UBA1P22314 1058 aaKnown RBP1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 NR4A1P22736 598 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 PRPH2P23942 346 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 MARCKSP29966 332 aaPredicted RBP1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 RPL10AP62906 217 aaKnown RBP1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 PEX6Q13608 980 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 PTGISQ16647 500 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 TMEM119Q4V9L6 283 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 LRRC73Q5JTD7 316 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 B3GNTL1Q67FW5 361 aaPredicted RBP1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 KIAA0930Q6ICG6 404 aaPredicted RBP1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 GRHL2Q6ISB3 625 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 SLC27A1Q6PCB7 646 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 DCLRE1AQ6PJP8 1040 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 RANBP10Q6VN20 620 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 C15orf39Q6ZRI6 1047 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 UNC93AQ86WB7 457 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 FBXO39Q8N4B4 442 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 ARFGAP1Q8N6T3 406 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 TRAF3IP1Q8TDR0 691 aaPredicted RBP1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 DNASE1L2Q92874 299 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 RNF183Q96D59 192 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 LRIG1Q96JA1 1093 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 MARK4Q96L34 752 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 C16orf45Q96MC5 204 aaPredicted RBP1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 MTMR9Q96QG7 549 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 CDRT15Q96T59 188 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 NAA11Q9BSU3 229 aaPredicted RBP1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 TCHPQ9BT92 498 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 PRRG4Q9BZD6 226 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 RTN4RQ9BZR6 473 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 HIPK3Q9H422 1215 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 PRDM13Q9H4Q3 707 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 AKIRIN1Q9H9L7 192 aaPredicted RBP1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 WDR6Q9NNW5 1121 aaKnown RBP1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 ASAH2Q9NR71 780 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 SLC25A10Q9UBX3 287 aaPredicted RBP1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 TUBE1Q9UJT0 475 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 RCOR1Q9UKL0 485 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 ITGA11Q9UKX5 1188 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 RCE1Q9Y256 329 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 STYXL1Q9Y6J8 313 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 AP1M2Q9Y6Q5 423 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 ASTN1O14525 1302 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 RNF103-CHMP3A0A140T963 221 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 A0A1W2PQ67 120 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 FRMD3A2A2Y4 597 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 EPOPA6NHQ4 379 aa1.89□□□□□ -2.11
SMCHD1-211ENST00000584897 RNF103O00237 685 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms