RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 IL1RNP18510 177 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 TACR1P25103 407 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 S100A3P33764 101 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 DCTP40126 519 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 CTSOP43234 321 aaPredicted RBP22.21■■□□□ 1.15
VPS53-211ENST00000571805 NEK2P51955 445 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 TMBIM6P55061 237 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 KCNAB2Q13303 367 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 SKIV2LQ15477 1246 aaKnown RBP22.21■■□□□ 1.15
VPS53-211ENST00000571805 GGTA1PQ4G0N0 100 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 C6orf141Q5SZD1 244 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 MPP7Q5T2T1 576 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 HTR3DQ70Z44 454 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 UBE2R2Q712K3 238 aaPredicted RBP22.21■■□□□ 1.15
VPS53-211ENST00000571805 ZNF555Q8NEP9 628 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 FNDC8Q8TC99 324 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 TANKQ92844 425 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 ECHDC3Q96DC8 303 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 FAM120BQ96EK7 910 aaKnown RBP22.21■■□□□ 1.15
VPS53-211ENST00000571805 SLC12A9Q9BXP2 914 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 LSM7Q9UK45 103 aaKnown RBP22.21■■□□□ 1.15
VPS53-211ENST00000571805 PPT2Q9UMR5 302 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 PPIL1Q9Y3C6 166 aa22.21■■□□□ 1.15
VPS53-211ENST00000571805 IGLV3-16A0A075B6K0 115 aa22.2■■□□□ 1.15
VPS53-211ENST00000571805 PQBP1O60828 265 aaKnown RBP22.2■■□□□ 1.15
VPS53-211ENST00000571805 SERPINA1P01009 418 aa22.2■■□□□ 1.15
VPS53-211ENST00000571805 GSNP06396 782 aa22.2■■□□□ 1.15
VPS53-211ENST00000571805 PRPS2P11908 318 aa22.2■■□□□ 1.15
VPS53-211ENST00000571805 LHCGRP22888 699 aa22.2■■□□□ 1.15
VPS53-211ENST00000571805 PRPH2P23942 346 aa22.2■■□□□ 1.15
VPS53-211ENST00000571805 AOAHP28039 575 aa22.2■■□□□ 1.15
VPS53-211ENST00000571805 TUBA3CQ13748 450 aa22.2■■□□□ 1.15
VPS53-211ENST00000571805 GBX1Q14549 363 aa22.2■■□□□ 1.15
VPS53-211ENST00000571805 MEP1AQ16819 746 aa22.2■■□□□ 1.15
VPS53-211ENST00000571805 CTU2Q2VPK5 515 aaKnown RBP22.2■■□□□ 1.15
VPS53-211ENST00000571805 LAIR2Q6ISS4 152 aa22.2■■□□□ 1.15
VPS53-211ENST00000571805 LRRC70Q7Z2Q7 622 aa22.2■■□□□ 1.15
VPS53-211ENST00000571805 RBM23Q86U06 439 aaKnown RBP22.2■■□□□ 1.15
VPS53-211ENST00000571805 METTL3Q86U44 580 aaKnown RBP22.2■■□□□ 1.15
VPS53-211ENST00000571805 ADHFE1Q8IWW8 467 aa22.2■■□□□ 1.15
VPS53-211ENST00000571805 SPARTQ8N0X7 666 aa22.2■■□□□ 1.15
VPS53-211ENST00000571805 ZCCHC7Q8N3Z6 543 aaKnown RBP22.2■■□□□ 1.15
VPS53-211ENST00000571805 CPXM2Q8N436 756 aa22.2■■□□□ 1.15
VPS53-211ENST00000571805 OR5K1Q8NHB7 308 aa22.2■■□□□ 1.15
VPS53-211ENST00000571805 NCLNQ969V3 563 aa22.2■■□□□ 1.15
VPS53-211ENST00000571805 SH3PXD2BA1X283 911 aa22.2■■□□□ 1.14
VPS53-211ENST00000571805 SRCP12931 536 aa22.2■■□□□ 1.14
VPS53-211ENST00000571805 PRKACGP22612 351 aa22.2■■□□□ 1.14
VPS53-211ENST00000571805 STK19P49842 368 aaPredicted RBP22.2■■□□□ 1.14
VPS53-211ENST00000571805 CYP4F8P98187 520 aa22.2■■□□□ 1.14
VPS53-211ENST00000571805 C16orf72Q14CZ0 275 aa22.2■■□□□ 1.14
VPS53-211ENST00000571805 MPPE1Q53F39 396 aa22.2■■□□□ 1.14
VPS53-211ENST00000571805 CHPFQ8IZ52 775 aa22.2■■□□□ 1.14
VPS53-211ENST00000571805 BEND7Q8N7W2 519 aaPredicted RBP22.2■■□□□ 1.14
VPS53-211ENST00000571805 ASIC4Q96FT7 647 aa22.2■■□□□ 1.14
VPS53-211ENST00000571805 ITCHQ96J02 903 aa22.2■■□□□ 1.14
VPS53-211ENST00000571805 HHIPQ96QV1 700 aa22.2■■□□□ 1.14
VPS53-211ENST00000571805 LHPPQ9H008 270 aa22.2■■□□□ 1.14
VPS53-211ENST00000571805 C16orf96A6NNT2 1141 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 EIF3FO00303 357 aaPredicted RBP22.19■■□□□ 1.14
VPS53-211ENST00000571805 HTR1AP08908 422 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 GSTM2P28161 218 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 CDKN2CP42773 168 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 SLC6A12P48065 614 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 NFATC3Q12968 1075 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 ANKRD46Q86W74 232 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 SLC39A11Q8N1S5 342 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 TMEM132CQ8N3T6 1108 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 ASB11Q8WXH4 323 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 TSSK3Q96PN8 268 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 HERC2P3Q9BVR0 1158 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 ELOVL6Q9H5J4 265 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 MRPL17Q9NRX2 175 aaKnown RBP22.19■■□□□ 1.14
VPS53-211ENST00000571805 CFAP97Q9P2B7 532 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 TMPRSS11EQ9UL52 423 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 SNX6Q9UNH7 406 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 PFDN1O60925 122 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 INHBBP09529 407 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 SDC1P18827 310 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 CD47Q08722 323 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 NOGQ13253 232 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 SPOUT1Q5T280 376 aaKnown RBP22.19■■□□□ 1.14
VPS53-211ENST00000571805 GTF2IRD2BQ6EKJ0 949 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 ANKRD26P1Q6NSI1 321 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 NEK5Q6P3R8 708 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 GAREM2Q75VX8 874 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 ZNF551Q7Z340 670 aaPredicted RBP22.19■■□□□ 1.14
VPS53-211ENST00000571805 GTF2IRD2Q86UP8 949 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 EID3Q8N140 333 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 L3MBTL4Q8NA19 623 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 FRS2Q8WU20 508 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 TESCQ96BS2 214 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 CMTM7Q96FZ5 175 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 TMEM169Q96HH4 297 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 PYURFQ96I23 114 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 RMND5AQ9H871 391 aa22.19■■□□□ 1.14
VPS53-211ENST00000571805 TMEFF2Q9UIK5 374 aaPredicted RBP22.19■■□□□ 1.14
VPS53-211ENST00000571805 WNT9AO14904 365 aa22.18■■□□□ 1.14
VPS53-211ENST00000571805 PER2O15055 1255 aa22.18■■□□□ 1.14
VPS53-211ENST00000571805 PRAMEF4O60810 478 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms