RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 DNALI1O14645 258 aaPredicted RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 APAF1O14727 1248 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 MGST3O14880 152 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 NPC1O15118 1278 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 CA12O43570 354 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 EIF1BO60739 113 aaKnown RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 FKBP6O75344 327 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 SPAG7O75391 227 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 CSDE1O75534 798 aaKnown RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 SLC22A3O75751 556 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 PIAS2O75928 621 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ZWINTO95229 277 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 DEXIO95424 95 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 NADKO95544 446 aaPredicted RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 GOT2P00505 430 aaKnown RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 GH2P01242 217 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 OPN1LWP04000 364 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 DNTTP04053 509 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 PROS1P07225 676 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 FBP1P09467 338 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 PRF1P14222 555 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 IL1R1P14778 569 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ZNF18P17022 549 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 TCN1P20061 433 aaPredicted RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 LPOP22079 712 aaPredicted RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 ATP5F1P24539 256 aaPredicted RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 PIK3R1P27986 724 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 RBL1P28749 1068 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 NMT1P30419 496 aaKnown RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 HOXA7P31268 230 aaPredicted RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 HOXA11P31270 313 aaPredicted RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 CYP2C18P33260 490 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 UGT2B10P36537 528 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ATP5C1P36542 298 aaKnown RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 HPCAL1P37235 193 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 WNT5AP41221 380 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 EIF1P41567 113 aaKnown RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 ACTR1BP42025 376 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 GNPDA1P46926 289 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 CPA2P48052 419 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ARCN1P48444 511 aaKnown RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 RGS19P49795 217 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 HNMTP50135 292 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 GATMP50440 423 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 CLCNKBP51801 687 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 CAPZA1P52907 286 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 MAPK10P53779 464 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 CDH4P55283 916 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 HUNKP57058 714 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 SOX8P57073 446 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 PSMC6P62333 389 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 IRX4P78413 519 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 NKX6-1P78426 367 aaPredicted RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 TAP2Q03519 686 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 GLO1Q04760 184 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 FADDQ13158 208 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 STX5Q13190 355 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 SPARCL1Q14515 664 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ZNF273Q14593 569 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 HLXQ14774 488 aaPredicted RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 ZNF846Q147U1 533 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ZMYND11Q15326 602 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 NAB2Q15742 525 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 UAP1Q16222 522 aaPredicted RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 DNAL1Q4LDG9 190 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 SLC39A12Q504Y0 691 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 TSTD2Q5T7W7 516 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 UBE2UQ5VVX9 321 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ATG16L1Q676U5 607 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 HMBOX1Q6NT76 420 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 TTI2Q6NXR4 508 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 FBXO42Q6P3S6 717 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 SCYL2Q6P3W7 929 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 VWA1Q6PCB0 445 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 RFWD3Q6PCD5 774 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 BLOC1S2Q6QNY1 142 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 PLEKHG7Q6ZR37 379 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 RTL4Q6ZR62 310 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 LINC00299Q6ZSB3 139 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 TPGS1Q6ZTW0 290 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 FAM47EQ6ZV65 393 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 CYB5R4Q7L1T6 521 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 PRSS42Q7Z5A4 293 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 RABEPKQ7Z6M1 372 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 DSG4Q86SJ6 1040 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 DHDDSQ86SQ9 333 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 PEG10Q86TG7 708 aaKnown RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 TAC4Q86UU9 113 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 KBTBD6Q86V97 674 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 IGFN1Q86VF2 1251 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ECHDC2Q86YB7 292 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 FAM217AQ8IXS0 508 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 DSELQ8IZU8 1212 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 CYP4Z2PQ8N1L4 340 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 PYROXD2Q8N2H3 581 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 SLC43A2Q8N370 569 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 GALNT4Q8N4A0 578 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 CELF5Q8N6W0 485 aaKnown RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 UBL4BQ8N7F7 174 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms