RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 MVB12BQ9H7P6 319 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 MRPL47Q9HD33 250 aaKnown RBP11.24□□□□□ -0.61
CLK3-222ENST00000568232 CUTCQ9NTM9 273 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 FANCLQ9NW38 375 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 SMOXQ9NWM0 555 aa11.24□□□□□ -0.61
CLK3-222ENST00000568232 FLNAP21333 2647 aaKnown RBP11.24□□□□□ -0.61
CLK3-222ENST00000568232 KLHL33A6NCF5 533 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 NKX2-6A6NCS4 301 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 OR5H15A6NDH6 313 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 NPIPA5E9PKD4 350 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 IFRD1O00458 451 aaPredicted RBP11.23□□□□□ -0.61
CLK3-222ENST00000568232 DDX3XO00571 662 aaKnown RBP eCLIP11.23□□□□□ -0.61
CLK3-222ENST00000568232 WFS1O76024 890 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 BMP10O95393 424 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 SERPINA7P05543 415 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 TPBGLP0DKB5 382 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 ITGAMP11215 1152 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 PYGMP11217 842 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 FOSL1P15407 271 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 PEBP1P30086 187 aaKnown RBP11.23□□□□□ -0.61
CLK3-222ENST00000568232 ARSFP54793 590 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 EEF1A2Q05639 463 aaKnown RBP11.23□□□□□ -0.61
CLK3-222ENST00000568232 AP1B1Q10567 949 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 OLIG2Q13516 323 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 SIRPB2Q5JXA9 342 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 CDKAL1Q5VV42 579 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 ZDHHC20Q5W0Z9 365 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 TMEM198Q66K66 360 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 ARHGEF18Q6ZSZ5 1173 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 NDUFAF7Q7L592 441 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 ZNF571Q7Z3V5 609 aaPredicted RBP11.23□□□□□ -0.61
CLK3-222ENST00000568232 DMRTC2Q8IXT2 367 aaPredicted RBP11.23□□□□□ -0.61
CLK3-222ENST00000568232 KCTD6Q8NC69 237 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 OR5AR1Q8NGP9 310 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 STT3BQ8TCJ2 826 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 BLOC1S5Q8TDH9 187 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 SRPK1Q96SB4 655 aaKnown RBP11.23□□□□□ -0.61
CLK3-222ENST00000568232 UCK2Q9BZX2 261 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 TRABDQ9H4I3 376 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 HAUS4Q9H6D7 363 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 COG4Q9H9E3 785 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.23□□□□□ -0.61
CLK3-222ENST00000568232 C3orf18Q9UK00 162 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 NXT1Q9UKK6 140 aaKnown RBP11.23□□□□□ -0.61
CLK3-222ENST00000568232 PPT2Q9UMR5 302 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 NPIPA1Q9UND3 350 aa11.23□□□□□ -0.61
CLK3-222ENST00000568232 ISM1B1AKI9 464 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 MED26O95402 600 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 TPM2P07951 284 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 ZGLP1P0C6A0 271 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 CCDC172P0C7W6 258 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 GZMAP12544 262 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 ABOP16442 354 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 MAGP20916 626 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 GRIA3P42263 894 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 PRLHRP49683 370 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 ADAM8P78325 824 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 FANCCQ00597 558 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 UBXN1Q04323 297 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 FOLH1Q04609 750 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 ZNF658BQ4V348 819 aaPredicted RBP11.22□□□□□ -0.61
CLK3-222ENST00000568232 KRTCAP3Q53RY4 240 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 ZNF766Q5HY98 468 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 CNSTQ6PJW8 725 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 NLRP9Q7RTR0 991 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 GLT6D1Q7Z4J2 308 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 CHERPQ8IWX8 916 aaKnown RBP11.22□□□□□ -0.61
CLK3-222ENST00000568232 NIPA2Q8N8Q9 360 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 LMNTD1Q8N9Z9 388 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 PHF10Q8WUB8 498 aaKnown RBP11.22□□□□□ -0.61
CLK3-222ENST00000568232 TFGQ92734 400 aaPredicted RBP11.22□□□□□ -0.61
CLK3-222ENST00000568232 MIEF2Q96C03 454 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 ZNF670Q9BS34 389 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 HES7Q9BYE0 225 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 ASB8Q9H765 288 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 GLOD4Q9HC38 313 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 STMN3Q9NZ72 180 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 PLAGL1Q9UM63 463 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 PKP3Q9Y446 797 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 HEY1Q9Y5J3 304 aa11.22□□□□□ -0.61
CLK3-222ENST00000568232 NSD1Q96L73 2696 aaPredicted RBP11.22□□□□□ -0.61
CLK3-222ENST00000568232 LOC285095A0A1B0GVY8 99 aa11.21□□□□□ -0.61
CLK3-222ENST00000568232 FAM90A27PA6NNH2 459 aa11.21□□□□□ -0.61
CLK3-222ENST00000568232 E9PLN8 166 aa11.21□□□□□ -0.61
CLK3-222ENST00000568232 FDXRP22570 491 aa11.21□□□□□ -0.61
CLK3-222ENST00000568232 SHMT2P34897 504 aa11.21□□□□□ -0.61
CLK3-222ENST00000568232 CD151P48509 253 aa11.21□□□□□ -0.61
CLK3-222ENST00000568232 CARSP49589 748 aaKnown RBP11.21□□□□□ -0.61
CLK3-222ENST00000568232 RAB28P51157 221 aa11.21□□□□□ -0.61
CLK3-222ENST00000568232 WNT3AP56704 352 aa11.21□□□□□ -0.61
CLK3-222ENST00000568232 ALDH6A1Q02252 535 aaKnown RBP11.21□□□□□ -0.61
CLK3-222ENST00000568232 ZNF33BQ06732 778 aa11.21□□□□□ -0.61
CLK3-222ENST00000568232 TFF3Q07654 80 aa11.21□□□□□ -0.61
CLK3-222ENST00000568232 CES4AQ5XG92 561 aa11.21□□□□□ -0.61
CLK3-222ENST00000568232 CEP128Q6ZU80 1094 aa11.21□□□□□ -0.61
CLK3-222ENST00000568232 MICALCLQ6ZW33 695 aa11.21□□□□□ -0.61
CLK3-222ENST00000568232 NEK10Q6ZWH5 1172 aa11.21□□□□□ -0.61
CLK3-222ENST00000568232 NINJ1Q92982 152 aa11.21□□□□□ -0.61
CLK3-222ENST00000568232 FAF2Q96CS3 445 aa11.21□□□□□ -0.61
CLK3-222ENST00000568232 VKORC1Q9BQB6 163 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms