RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 IRF3Q14653 427 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 ITPRIPL2Q3MIP1 535 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 MOGAT2Q3SYC2 334 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 HIGD2BQ4VC39 106 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 C1orf122Q6ZSJ8 110 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 AACSQ86V21 672 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 ADIPOR2Q86V24 386 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 TMEM139Q8IV31 216 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 OR5M8Q8NGP6 311 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 OR52N5Q8NH56 324 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 EXD1Q8NHP7 514 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 SOSTQ9BQB4 213 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 CHCHD6Q9BRQ6 235 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 MMP27Q9H306 513 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 SYNCQ9H7C4 482 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 PANK4Q9NVE7 773 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 P4HTMQ9NXG6 502 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 DPP3Q9NY33 737 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 ZHX1Q9UKY1 873 aaPredicted RBP2.43□□□□□ -2.02
VPS35-207ENST00000568191 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP2.43□□□□□ -2.02
VPS35-207ENST00000568191 PA2G4Q9UQ80 394 aaKnown RBP2.43□□□□□ -2.02
VPS35-207ENST00000568191 IGHV3OR16-10A0A075B7F0 116 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 LNP1A1A4G5 178 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 PI4KAP2A4QPH2 592 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 C2orf81A6NN90 581 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 AP3D1O14617 1153 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 PI15O43692 258 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 DOK2O60496 412 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 SLC2A2P11168 524 aaPredicted RBP2.42□□□□□ -2.02
VPS35-207ENST00000568191 CAPN3P20807 821 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 CSTF2P33240 577 aaKnown RBP eCLIP2.42□□□□□ -2.02
VPS35-207ENST00000568191 OPRL1P41146 370 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 SUOXP51687 545 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 TPD52P55327 224 aaPredicted RBP2.42□□□□□ -2.02
VPS35-207ENST00000568191 PSMC6P62333 389 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 KLHL26Q53HC5 615 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 C11orf63Q6NUN7 778 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 IL27RAQ6UWB1 636 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 GPRIN3Q6ZVF9 776 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 TMPRSS11FQ6ZWK6 438 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 LDB1Q86U70 411 aaPredicted RBP2.42□□□□□ -2.02
VPS35-207ENST00000568191 METTL4Q8N3J2 472 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 TTC39CQ8N584 583 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 GOLGA6L2Q8N9W4 650 aaPredicted RBP2.42□□□□□ -2.02
VPS35-207ENST00000568191 PRSS33Q8NF86 280 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 OR2AJ1Q8NGZ0 328 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 SLC45A3Q96JT2 553 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 AGAP4Q96P64 663 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 BARD1Q99728 777 aaKnown RBP2.42□□□□□ -2.02
VPS35-207ENST00000568191 DPAGT1Q9H3H5 408 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 TRPV4Q9HBA0 871 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 B3GAT2Q9NPZ5 323 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 GKN1Q9NS71 199 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 PRR34Q9NV39 138 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 NDE1Q9NXR1 346 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 B3GAT1Q9P2W7 334 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 SEC63Q9UGP8 760 aaKnown RBP2.42□□□□□ -2.02
VPS35-207ENST00000568191 MTUS1Q9ULD2 1270 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 TNNQ9UQP3 1299 aa2.42□□□□□ -2.02
VPS35-207ENST00000568191 IGLV3-10A0A075B6K4 115 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 ENO4A6NNW6 628 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 A8MU10 97 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 MPTX1A8MV57 137 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 H0YAE9 185 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 VTNP04004 478 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 OR2T7P0C7T2 308 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 CAPN2P17655 700 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 RBMS1P29558 406 aaKnown RBP2.41□□□□□ -2.02
VPS35-207ENST00000568191 GABRA5P31644 462 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 PSMB10P40306 273 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 LEPRP48357 1165 aaKnown RBP2.41□□□□□ -2.02
VPS35-207ENST00000568191 DDX10Q13206 875 aaKnown RBP2.41□□□□□ -2.02
VPS35-207ENST00000568191 SIM2Q14190 667 aaPredicted RBP2.41□□□□□ -2.02
VPS35-207ENST00000568191 TNIP1Q15025 636 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 C15orf59Q2T9L4 293 aaPredicted RBP2.41□□□□□ -2.02
VPS35-207ENST00000568191 SLC35D3Q5M8T2 416 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 ZNF343Q6P1L6 599 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 FIGLAQ6QHK4 219 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 TMEM207Q6UWW9 146 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 KIF6Q6ZMV9 814 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 RSRC2Q7L4I2 434 aaKnown RBP2.41□□□□□ -2.02
VPS35-207ENST00000568191 CHMP1BQ7LBR1 199 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 RTN4RL2Q86UN3 420 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 TMEM173Q86WV6 379 aaPredicted RBP2.41□□□□□ -2.02
VPS35-207ENST00000568191 ARHGAP24Q8N264 748 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 Q8N377 158 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 TDRD5Q8NAT2 981 aaKnown RBP2.41□□□□□ -2.02
VPS35-207ENST00000568191 RAD9AQ99638 391 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 KIFC3Q9BVG8 833 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 OR2B2Q9GZK3 357 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 GPN1Q9HCN4 374 aaPredicted RBP2.41□□□□□ -2.02
VPS35-207ENST00000568191 CHST11Q9NPF2 352 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 SERINC1Q9NRX5 453 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 FAM207AQ9NSI2 230 aaPredicted RBP2.41□□□□□ -2.02
VPS35-207ENST00000568191 MAN2C1Q9NTJ4 1040 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 ZNF701Q9NV72 531 aaPredicted RBP2.41□□□□□ -2.02
VPS35-207ENST00000568191 TRIM17Q9Y577 477 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 ANGPTL3Q9Y5C1 460 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 CSNK1G3Q9Y6M4 447 aa2.41□□□□□ -2.02
VPS35-207ENST00000568191 AGRNO00468 2067 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms