RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ZFPM2Q8WW38 1151 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 MTERF3Q96E29 417 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 ABHD8Q96I13 439 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 MSLNLQ96KJ4 702 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 NSUN5Q96P11 429 aaKnown RBP7.32□□□□□ -1.24
VPS39-204ENST00000561818 BTBD9Q96Q07 612 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 MYADMQ96S97 322 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 CDRT15Q96T59 188 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 ACOX2Q99424 681 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 GAS2L1Q99501 681 aaPredicted RBP7.32□□□□□ -1.24
VPS39-204ENST00000561818 ZNF184Q99676 751 aaPredicted RBP7.32□□□□□ -1.24
VPS39-204ENST00000561818 WRAP53Q9BUR4 548 aaKnown RBP7.32□□□□□ -1.24
VPS39-204ENST00000561818 C1QTNF2Q9BXJ5 285 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 DPY30Q9C005 99 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 PCED1AQ9H1Q7 454 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 TRIT1Q9H3H1 467 aaKnown RBP7.32□□□□□ -1.24
VPS39-204ENST00000561818 MVB12BQ9H7P6 319 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 SGK2Q9HBY8 427 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 S100A14Q9HCY8 104 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 FAM120CQ9NX05 1096 aaKnown RBP7.32□□□□□ -1.24
VPS39-204ENST00000561818 CLDND1Q9NY35 253 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 ACTR3BQ9P1U1 418 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 VPS29Q9UBQ0 182 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 KLQ9UEF7 1012 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 DMTF1Q9Y222 760 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 LRCH1Q9Y2L9 728 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 NUMBLQ9Y6R0 609 aa7.32□□□□□ -1.24
VPS39-204ENST00000561818 C2orf16Q68DN1 1984 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 ATP6AP2A0A1C7CYW4 349 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 OR2AG2A6NM03 316 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 ARHGEF33A8MVX0 844 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 TNFRSF10CO14798 259 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 CASQ2O14958 399 aaPredicted RBP7.31□□□□□ -1.24
VPS39-204ENST00000561818 TRIM24O15164 1050 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 TAPBPO15533 448 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 HNRNPRO43390 633 aaKnown RBP7.31□□□□□ -1.24
VPS39-204ENST00000561818 ENTPD5O75356 428 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 ATP6AP2O75787 350 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 RNASEH2AO75792 299 aaKnown RBP7.31□□□□□ -1.24
VPS39-204ENST00000561818 POP7O75817 140 aaKnown RBP7.31□□□□□ -1.24
VPS39-204ENST00000561818 SEMA3DO95025 777 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 C1orf105O95561 183 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 JUNP05412 331 aaKnown RBP7.31□□□□□ -1.24
VPS39-204ENST00000561818 C8BP07358 591 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 HOXB2P14652 356 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 ANPEPP15144 967 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 IL10P22301 178 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 HTR1EP28566 365 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 OXTRP30559 389 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 GRK3P35626 688 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 GMPRP36959 345 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 HALP42357 657 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 SLC6A11P48066 632 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 PTDSS1P48651 473 aaKnown RBP7.31□□□□□ -1.24
VPS39-204ENST00000561818 CLDN8P56748 225 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 YPEL5P62699 121 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 ABATP80404 500 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 RHDQ02161 417 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 ACSM2AQ08AH3 577 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 CNTN1Q12860 1018 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 MAPKAPK3Q16644 382 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 ZNF423Q2M1K9 1284 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 KHDC1Q4VXA5 237 aaKnown RBP7.31□□□□□ -1.24
VPS39-204ENST00000561818 TMEM196Q5HYL7 178 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 ANXA8L1Q5VT79 327 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 EGFLAMQ63HQ2 1017 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 ICE2Q659A1 982 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 ATG9BQ674R7 924 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 ACSM2BQ68CK6 577 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 ERICH5Q6P6B1 374 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 CYP20A1Q6UW02 462 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 LCTLQ6UWM7 567 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 ATG14Q6ZNE5 492 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 DET1Q7L5Y6 550 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 THOC6Q86W42 341 aaKnown RBP7.31□□□□□ -1.24
VPS39-204ENST00000561818 HEATR4Q86WZ0 1026 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 HORMAD1Q86X24 394 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 DHFR2Q86XF0 187 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 PTRH1Q86Y79 214 aaKnown RBP7.31□□□□□ -1.24
VPS39-204ENST00000561818 SYTL1Q8IYJ3 562 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 ADCY4Q8NFM4 1077 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 OR52B6Q8NGF0 335 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 OR5K2Q8NHB8 316 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 HMGCLL1Q8TB92 370 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 LKAAEAR1Q8TD35 194 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 GANCQ8TET4 914 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 SLC13A3Q8WWT9 602 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 DNAJC9Q8WXX5 260 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 SMPDL3AQ92484 453 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 NCLNQ969V3 563 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 SLC22A18Q96BI1 424 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 LRRC58Q96CX6 371 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 ZNF764Q96H86 408 aaPredicted RBP7.31□□□□□ -1.24
VPS39-204ENST00000561818 PRR11Q96HE9 360 aaPredicted RBP7.31□□□□□ -1.24
VPS39-204ENST00000561818 ITCHQ96J02 903 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 ZFYVE19Q96K21 471 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 FCRL1Q96LA6 429 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 PPP1R36Q96LQ0 422 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 SMIM14Q96QK8 99 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 GPATCH1Q9BRR8 931 aaKnown RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms