RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 OR4K3Q96R72 315 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 KLQ9UEF7 1012 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 TRPS1Q9UHF7 1281 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 LNPEPQ9UIQ6 1025 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 PNMA8BQ9ULN7 279 aaPredicted RBP20.66■□□□□ 0.9
CLN3-209ENST00000561689 INVSQ9Y283 1065 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 ZFC3H1O60293 1989 aaKnown RBP20.66■□□□□ 0.9
CLN3-209ENST00000561689 PRAMEF26H0Y7S4 382 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 PRAMEF4O60810 478 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 PEX11AO75192 247 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 APBB3O95704 486 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 DCNP07585 359 aaKnown RBP20.66■□□□□ 0.9
CLN3-209ENST00000561689 KELP23276 732 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 THOP1P52888 689 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 KCNJ2P63252 427 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 CPSF6Q16630 551 aaKnown RBP eCLIP20.66■□□□□ 0.9
CLN3-209ENST00000561689 XKR7Q5GH72 579 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 PRAMEF9Q5VWM5 478 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 SPEM1Q8N4L4 309 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 OR56A3Q8NH54 315 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 SNX19Q92543 992 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 IL17FQ96PD4 163 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 OR2M4Q96R27 311 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 LRMDAQ9H2I8 198 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 CHRDQ9H2X0 955 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 FARSBQ9NSD9 589 aaKnown RBP20.66■□□□□ 0.9
CLN3-209ENST00000561689 HS3ST3A1Q9Y663 406 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 PIK3R1P27986 724 aa20.65■□□□□ 0.9
CLN3-209ENST00000561689 RASSF2P50749 326 aa20.65■□□□□ 0.9
CLN3-209ENST00000561689 NAA25Q14CX7 972 aa20.65■□□□□ 0.9
CLN3-209ENST00000561689 SGO1Q5FBB7 561 aa20.65■□□□□ 0.9
CLN3-209ENST00000561689 CAPRIN2Q6IMN6 1127 aaKnown RBP20.65■□□□□ 0.9
CLN3-209ENST00000561689 RINLQ6ZS11 566 aa20.65■□□□□ 0.9
CLN3-209ENST00000561689 DEFB119Q8N690 84 aa20.65■□□□□ 0.9
CLN3-209ENST00000561689 OR13H1Q8NG92 308 aa20.65■□□□□ 0.9
CLN3-209ENST00000561689 OR5K2Q8NHB8 316 aa20.65■□□□□ 0.9
CLN3-209ENST00000561689 FBXO27Q8NI29 283 aa20.65■□□□□ 0.9
CLN3-209ENST00000561689 MAGEC3Q8TD91 643 aa20.65■□□□□ 0.9
CLN3-209ENST00000561689 CLDN23Q96B33 292 aa20.65■□□□□ 0.9
CLN3-209ENST00000561689 INSM2Q96T92 566 aaPredicted RBP20.65■□□□□ 0.9
CLN3-209ENST00000561689 NRTNQ99748 197 aa20.65■□□□□ 0.9
CLN3-209ENST00000561689 ZBTB32Q9Y2Y4 487 aaPredicted RBP20.65■□□□□ 0.9
CLN3-209ENST00000561689 ALDOCP09972 364 aaKnown RBP20.65■□□□□ 0.9
CLN3-209ENST00000561689 HALP42357 657 aa20.65■□□□□ 0.9
CLN3-209ENST00000561689 FASTKQ14296 549 aaKnown RBP20.65■□□□□ 0.9
CLN3-209ENST00000561689 DCUN1D3Q8IWE4 304 aa20.65■□□□□ 0.9
CLN3-209ENST00000561689 RAD51AP1Q96B01 352 aa20.65■□□□□ 0.9
CLN3-209ENST00000561689 C12orf66Q96MD2 445 aa20.65■□□□□ 0.9
CLN3-209ENST00000561689 PRDM8Q9NQV8 689 aa20.65■□□□□ 0.9
CLN3-209ENST00000561689 PRR19A6NJB7 356 aa20.64■□□□□ 0.89
CLN3-209ENST00000561689 PDZK1P1A8MUH7 402 aa20.64■□□□□ 0.89
CLN3-209ENST00000561689 E7EQ34 232 aa20.64■□□□□ 0.89
CLN3-209ENST00000561689 HNRNPCL1O60812 293 aaKnown RBP20.64■□□□□ 0.89
CLN3-209ENST00000561689 VPS4BO75351 444 aa20.64■□□□□ 0.89
CLN3-209ENST00000561689 LBPP18428 481 aa20.64■□□□□ 0.89
CLN3-209ENST00000561689 IDSP22304 550 aa20.64■□□□□ 0.89
CLN3-209ENST00000561689 PTPN4P29074 926 aa20.64■□□□□ 0.89
CLN3-209ENST00000561689 TBPL1P62380 186 aa20.64■□□□□ 0.89
CLN3-209ENST00000561689 YPEL5P62699 121 aa20.64■□□□□ 0.89
CLN3-209ENST00000561689 CHIT1Q13231 466 aa20.64■□□□□ 0.89
CLN3-209ENST00000561689 Q6ZSR9 355 aa20.64■□□□□ 0.89
CLN3-209ENST00000561689 C2orf73Q8N5S3 287 aaPredicted RBP20.64■□□□□ 0.89
CLN3-209ENST00000561689 MTFMTQ96DP5 389 aaKnown RBP20.64■□□□□ 0.89
CLN3-209ENST00000561689 CMTM5Q96DZ9 223 aa20.64■□□□□ 0.89
CLN3-209ENST00000561689 CCT7Q99832 543 aa20.64■□□□□ 0.89
CLN3-209ENST00000561689 CAAP1Q9H8G2 361 aa20.64■□□□□ 0.89
CLN3-209ENST00000561689 PFDN4Q9NQP4 134 aa20.64■□□□□ 0.89
CLN3-209ENST00000561689 SIT1Q9Y3P8 196 aa20.64■□□□□ 0.89
CLN3-209ENST00000561689 SLCO1B1Q9Y6L6 691 aa20.64■□□□□ 0.89
CLN3-209ENST00000561689 B2RBV5 119 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 E7ENX8 843 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 ULK1O75385 1050 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 PNLIPRP1P54315 467 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 TAP2Q03519 686 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 CLCA4Q14CN2 919 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 SUSD1Q6UWL2 747 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 ABI3BPQ7Z7G0 1075 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 KLHDC8AQ8IYD2 350 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 SLC22A18ASQ8N1D0 253 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 TRIT1Q9H3H1 467 aaKnown RBP20.63■□□□□ 0.89
CLN3-209ENST00000561689 SLC40A1Q9NP59 571 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 CD320Q9NPF0 282 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 IMP3Q9NV31 184 aaKnown RBP20.63■□□□□ 0.89
CLN3-209ENST00000561689 ZNF490Q9ULM2 529 aaPredicted RBP20.63■□□□□ 0.89
CLN3-209ENST00000561689 DMTF1Q9Y222 760 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 OR52A4PA6NMU1 304 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 MANBAO00462 879 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 KCNJ13O60928 360 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 RPN2P04844 631 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 COX4I1P13073 169 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 AK4P27144 223 aaPredicted RBP20.63■□□□□ 0.89
CLN3-209ENST00000561689 SRP54P61011 504 aaKnown RBP20.63■□□□□ 0.89
CLN3-209ENST00000561689 IRF8Q02556 426 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 ALG11Q2TAA5 492 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 XKR6Q5GH73 641 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 CAPN13Q6MZZ7 669 aaPredicted RBP20.63■□□□□ 0.89
CLN3-209ENST00000561689 SFRP1Q8N474 314 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 L3MBTL4Q8NA19 623 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 CCL4L1Q8NHW4 92 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 FERD3LQ96RJ6 166 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms