RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 NDC1Q9BTX1 674 aa9.84□□□□□ -0.83
LDLR-214ENST00000560628 MENTQ9BUN1 341 aa9.84□□□□□ -0.83
LDLR-214ENST00000560628 IL22Q9GZX6 179 aa9.84□□□□□ -0.83
LDLR-214ENST00000560628 CHRNA10Q9GZZ6 450 aa9.84□□□□□ -0.83
LDLR-214ENST00000560628 P2RY12Q9H244 342 aa9.84□□□□□ -0.83
LDLR-214ENST00000560628 MLXIPLQ9NP71 852 aa9.84□□□□□ -0.83
LDLR-214ENST00000560628 TXLNGQ9NUQ3 528 aa9.84□□□□□ -0.83
LDLR-214ENST00000560628 SYBUQ9NX95 663 aa9.84□□□□□ -0.83
LDLR-214ENST00000560628 EURLQ9NYK6 297 aa9.84□□□□□ -0.83
LDLR-214ENST00000560628 LUZP4Q9P127 313 aa9.84□□□□□ -0.83
LDLR-214ENST00000560628 IFT80Q9P2H3 777 aaPredicted RBP9.84□□□□□ -0.83
LDLR-214ENST00000560628 RUVBL2Q9Y230 463 aaKnown RBP9.84□□□□□ -0.83
LDLR-214ENST00000560628 PTRH2Q9Y3E5 179 aaKnown RBP9.84□□□□□ -0.83
LDLR-214ENST00000560628 PCDHGA9Q9Y5G4 932 aaKnown RBP9.84□□□□□ -0.83
LDLR-214ENST00000560628 NFS1Q9Y697 457 aa9.84□□□□□ -0.83
LDLR-214ENST00000560628 TNRC6AQ8NDV7 1962 aaKnown RBP9.84□□□□□ -0.83
LDLR-214ENST00000560628 SETXQ7Z333 2677 aaKnown RBP9.83□□□□□ -0.84
LDLR-214ENST00000560628 ASH1LQ9NR48 2969 aaKnown RBP9.83□□□□□ -0.84
LDLR-214ENST00000560628 MASP2O00187 686 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 CNOT3O75175 753 aaKnown RBP9.83□□□□□ -0.84
LDLR-214ENST00000560628 AVILO75366 819 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 CEACAM4O75871 244 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 ARNTP27540 789 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 BDKRB1P46663 353 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 SSPNQ14714 243 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 NKAIN1Q4KMZ8 207 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 RHBDD2Q6NTF9 364 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 LRRC8BQ6P9F7 803 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 TTC23LQ6PF05 361 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 FIGLAQ6QHK4 219 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 UNC5DQ6UXZ4 953 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 ZNF662Q6ZS27 426 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 MED25Q71SY5 747 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 OTOAQ7RTW8 1153 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 SDCCAG8Q86SQ7 713 aaPredicted RBP9.83□□□□□ -0.84
LDLR-214ENST00000560628 RAB43Q86YS6 212 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 DCUN1D3Q8IWE4 304 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 MPP5Q8N3R9 675 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 PRELID2Q8N945 189 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 TMEM102Q8N9M5 508 aaPredicted RBP9.83□□□□□ -0.84
LDLR-214ENST00000560628 OR2L8Q8NGY9 312 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 PANX3Q96QZ0 392 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 DHRS4Q9BTZ2 278 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 KIFC1Q9BW19 673 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 NUDT9Q9BW91 350 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 NDOR1Q9UHB4 597 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 GNPTGQ9UJJ9 305 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 PADI2Q9Y2J8 665 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 ZKSCAN5Q9Y2L8 839 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 CRYL1Q9Y2S2 319 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 ZNF451Q9Y4E5 1061 aa9.83□□□□□ -0.84
LDLR-214ENST00000560628 AP3B1O00203 1094 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 PEX12O00623 359 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 RASGRF2O14827 1237 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 PRICKLE3O43900 615 aaPredicted RBP9.82□□□□□ -0.84
LDLR-214ENST00000560628 NIPSNAP2O75323 286 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 C1orf105O95561 183 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 S1PR4O95977 384 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 MCM3P25205 808 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 FOLR3P41439 243 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 RRADP55042 308 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 SRSF1Q07955 248 aaKnown RBP eCLIP9.82□□□□□ -0.84
LDLR-214ENST00000560628 GPS1Q13098 491 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 CTSL3PQ5NE16 218 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 PAPD7Q5XG87 772 aaKnown RBP9.82□□□□□ -0.84
LDLR-214ENST00000560628 FCRL6Q6DN72 434 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 MRNIPQ6NTE8 343 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 CNSTQ6PJW8 725 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 TTLL10Q6ZVT0 673 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 MRGPREQ86SM8 312 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 ATCAYQ86WG3 371 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 LRRC6Q86X45 466 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 SPNS2Q8IVW8 549 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 EFCAB3Q8N7B9 438 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 TRIM58Q8NG06 486 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 CPT1CQ8TCG5 803 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 PROKR1Q8TCW9 393 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.82□□□□□ -0.84
LDLR-214ENST00000560628 RAD51AP1Q96B01 352 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 SLC22A18Q96BI1 424 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 MS4A14Q96JA4 679 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 BIRC8Q96P09 236 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 MIPEPQ99797 713 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 C17orf62Q9BQA9 187 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 TRIM56Q9BRZ2 755 aaKnown RBP9.82□□□□□ -0.84
LDLR-214ENST00000560628 SLC22A11Q9NSA0 550 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 HOMER3Q9NSC5 361 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 GPR83Q9NYM4 423 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 IL1RAPL1Q9NZN1 696 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 ANKMY1Q9P2S6 941 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 GALPQ9UBC7 116 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 SOX13Q9UN79 622 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 G3BP2Q9UN86 482 aaKnown RBP9.82□□□□□ -0.84
LDLR-214ENST00000560628 SRPK3Q9UPE1 567 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 PPP2R2CQ9Y2T4 447 aa9.82□□□□□ -0.84
LDLR-214ENST00000560628 KPNA5O15131 536 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 VPS4BO75351 444 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 KRT14P02533 472 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 UMODP07911 640 aa9.81□□□□□ -0.84
LDLR-214ENST00000560628 F7P08709 466 aaPredicted RBP9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms