RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 DCP1BQ8IZD4 617 aaKnown RBP4.76□□□□□ -1.65
SCFD1-209ENST00000553280 BMPERQ8N8U9 685 aa4.76□□□□□ -1.65
SCFD1-209ENST00000553280 THAP8Q8NA92 274 aa4.76□□□□□ -1.65
SCFD1-209ENST00000553280 FGFBP3Q8TAT2 258 aa4.76□□□□□ -1.65
SCFD1-209ENST00000553280 CCDC107Q8WV48 283 aa4.76□□□□□ -1.65
SCFD1-209ENST00000553280 FIG4Q92562 907 aa4.76□□□□□ -1.65
SCFD1-209ENST00000553280 HMCESQ96FZ2 354 aa4.76□□□□□ -1.65
SCFD1-209ENST00000553280 OXNAD1Q96HP4 312 aaPredicted RBP4.76□□□□□ -1.65
SCFD1-209ENST00000553280 ABHD8Q96I13 439 aa4.76□□□□□ -1.65
SCFD1-209ENST00000553280 SGK494Q96LW2 274 aa4.76□□□□□ -1.65
SCFD1-209ENST00000553280 ZNF385AQ96PM9 386 aaKnown RBP4.76□□□□□ -1.65
SCFD1-209ENST00000553280 SLC2A11Q9BYW1 496 aa4.76□□□□□ -1.65
SCFD1-209ENST00000553280 IL25Q9H293 177 aa4.76□□□□□ -1.65
SCFD1-209ENST00000553280 ARRDC1-AS1Q9H2J1 176 aa4.76□□□□□ -1.65
SCFD1-209ENST00000553280 ZNF701Q9NV72 531 aaPredicted RBP4.76□□□□□ -1.65
SCFD1-209ENST00000553280 SLCO1C1Q9NYB5 712 aa4.76□□□□□ -1.65
SCFD1-209ENST00000553280 MOSPD1Q9UJG1 213 aa4.76□□□□□ -1.65
SCFD1-209ENST00000553280 TRAV24A0A0B4J272 114 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 CTAGE9A4FU28 777 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 PROB1E7EW31 1015 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 RNASEH1O60930 286 aaKnown RBP4.75□□□□□ -1.65
SCFD1-209ENST00000553280 ATP6AP2O75787 350 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 GH1P01241 217 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 CRYABP02511 175 aaKnown RBP4.75□□□□□ -1.65
SCFD1-209ENST00000553280 KRT19P08727 400 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 HMOX1P09601 288 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 CTAGE8P0CG41 777 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 HAPLN1P10915 354 aaPredicted RBP4.75□□□□□ -1.65
SCFD1-209ENST00000553280 ACP2P11117 423 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 HLA-DOBP13765 273 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 CBLP22681 906 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 AHRP35869 848 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 GSDMDP57764 484 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 BPIFB3P59826 476 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 NPRL3Q12980 569 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 CA9Q16790 459 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 DUOXA1Q1HG43 343 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 CTU2Q2VPK5 515 aaKnown RBP4.75□□□□□ -1.65
SCFD1-209ENST00000553280 CYB5D1Q6P9G0 228 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 CTAGE4Q8IX94 777 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.75□□□□□ -1.65
SCFD1-209ENST00000553280 TRIML1Q8N9V2 468 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 NPEPL1Q8NDH3 523 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 OR13J1Q8NGT2 312 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 NCOA7Q8NI08 942 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 TMED6Q8WW62 240 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 PROX1Q92786 737 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 SGF29Q96ES7 293 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 KLHL5Q96PQ7 755 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 TRPC7Q9HCX4 862 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 OCIAD1Q9NX40 245 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 VDAC3Q9Y277 283 aa4.75□□□□□ -1.65
SCFD1-209ENST00000553280 ACEP12821 1306 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 A0A0G2JPF8 293 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 SMIM30A4D0T7 59 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 CASTOR2A6NHX0 329 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 SRRM3A6NNA2 597 aaPredicted RBP4.74□□□□□ -1.65
SCFD1-209ENST00000553280 HNRNPCL3B7ZW38 293 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 RTCAO00442 366 aaKnown RBP4.74□□□□□ -1.65
SCFD1-209ENST00000553280 FLRT2O43155 660 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 ZBTB14O43829 449 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 PRAF2O60831 178 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 GSRP00390 522 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 C9P02748 559 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 HNRNPCL4P0DMR1 293 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 CKMT2P17540 419 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 CCND3P30281 292 aaPredicted RBP4.74□□□□□ -1.65
SCFD1-209ENST00000553280 NME5P56597 212 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 ARF5P84085 180 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 PTGISQ16647 500 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 ELFN2Q5R3F8 820 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.74□□□□□ -1.65
SCFD1-209ENST00000553280 FAM171BQ6P995 826 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 CNSTQ6PJW8 725 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 CNTN4Q8IWV2 1026 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 CRYBG2Q8N1P7 616 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 PELI3Q8N2H9 469 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 MUC20Q8N307 709 aaPredicted RBP4.74□□□□□ -1.65
SCFD1-209ENST00000553280 RYBPQ8N488 228 aaPredicted RBP4.74□□□□□ -1.65
SCFD1-209ENST00000553280 AMER3Q8N944 861 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 PSMA8Q8TAA3 256 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 IRGQQ8WZA9 623 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 BCL2L2Q92843 193 aaPredicted RBP4.74□□□□□ -1.65
SCFD1-209ENST00000553280 PHF21BQ96EK2 531 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 TM6SF1Q9BZW5 370 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 LSG1Q9H089 658 aaKnown RBP4.74□□□□□ -1.65
SCFD1-209ENST00000553280 SNX25Q9H3E2 840 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 THAP9Q9H5L6 903 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 SRD5A3Q9H8P0 318 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 Q9H8V8 135 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 GSN-AS1Q9NRJ2 163 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 TMEM161AQ9NX61 479 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 TRPC4Q9UBN4 977 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 PA2G4Q9UQ80 394 aaKnown RBP4.74□□□□□ -1.65
SCFD1-209ENST00000553280 JRKLQ9Y4A0 524 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 TRIM17Q9Y577 477 aa4.74□□□□□ -1.65
SCFD1-209ENST00000553280 SPAG9O60271 1321 aaKnown RBP4.73□□□□□ -1.65
SCFD1-209ENST00000553280 CGNL1Q0VF96 1302 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 E9PI62 339 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 GAPDHSO14556 408 aaPredicted RBP4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms