RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 PCDH9Q9HC56 1237 aa5.51□□□□□ -1.53
SCFD1-208ENST00000553278 CGNQ9P2M7 1197 aaKnown RBP5.51□□□□□ -1.53
SCFD1-208ENST00000553278 KCNK6Q9Y257 313 aa5.51□□□□□ -1.53
SCFD1-208ENST00000553278 HBS1LQ9Y450 684 aaKnown RBP5.51□□□□□ -1.53
SCFD1-208ENST00000553278 SPIN1Q9Y657 262 aaPredicted RBP5.51□□□□□ -1.53
SCFD1-208ENST00000553278 TRAV24A0A0B4J272 114 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 TMEM272A0A1B0GTI8 110 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 CFAP73A6NFT4 308 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 MANSC4A6NHS7 340 aaPredicted RBP5.5□□□□□ -1.53
SCFD1-208ENST00000553278 ANKRD66B4E2M5 251 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 SSX5O60225 188 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 NDUFB8O95169 186 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 MOCS2O96007 188 aaPredicted RBP5.5□□□□□ -1.53
SCFD1-208ENST00000553278 TGFAP01135 160 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 IGLV2-14P01704 120 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 SMIM18P0DKX4 95 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 HAPLN1P10915 354 aaPredicted RBP5.5□□□□□ -1.53
SCFD1-208ENST00000553278 KELP23276 732 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 RPA1P27694 616 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 MPGP29372 298 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 ACAA2P42765 397 aaKnown RBP5.5□□□□□ -1.53
SCFD1-208ENST00000553278 MAGEB1P43366 347 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 MXI1P50539 228 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 SMSP52788 366 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 TGFB2P61812 414 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 PDE7AQ13946 482 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 DAZAP2Q15038 168 aaPredicted RBP5.5□□□□□ -1.53
SCFD1-208ENST00000553278 LCE5AQ5TCM9 118 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 Q6ZTK2 550 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 PTF1AQ7RTS3 328 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 PPP1R42Q7Z4L9 355 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 CTU1Q7Z7A3 348 aaKnown RBP5.5□□□□□ -1.53
SCFD1-208ENST00000553278 MEX3DQ86XN8 651 aaKnown RBP5.5□□□□□ -1.53
SCFD1-208ENST00000553278 FBXO30Q8TB52 745 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 SLC26A7Q8TE54 656 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 SLC38A5Q8WUX1 472 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 THOC1Q96FV9 657 aaKnown RBP5.5□□□□□ -1.53
SCFD1-208ENST00000553278 RBM18Q96H35 190 aaKnown RBP5.5□□□□□ -1.53
SCFD1-208ENST00000553278 C17orf62Q9BQA9 187 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 FAM213AQ9BRX8 229 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 SLC2A11Q9BYW1 496 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 SEMA4CQ9C0C4 833 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 CUEDC2Q9H467 287 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 MAGEF1Q9HAY2 307 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 PPANQ9NQ55 473 aaKnown RBP5.5□□□□□ -1.53
SCFD1-208ENST00000553278 GSN-AS1Q9NRJ2 163 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 SERINC1Q9NRX5 453 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 GKN1Q9NS71 199 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 B3GAT1Q9P2W7 334 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 KCNN3Q9UGI6 736 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 RABL2BQ9UNT1 228 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 ATAD2BQ9ULI0 1458 aa5.5□□□□□ -1.53
SCFD1-208ENST00000553278 SYNJ2BP-COX16A0A087WUM0 186 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 A0A1W2PPK0 400 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 OR5K3A6NET4 321 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 TMEM178BH3BS89 294 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 H1F0P07305 194 aaKnown RBP5.49□□□□□ -1.53
SCFD1-208ENST00000553278 CYP19A1P11511 503 aaPredicted RBP5.49□□□□□ -1.53
SCFD1-208ENST00000553278 IRF2P14316 349 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 CCND2P30279 289 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 PLCD1P51178 756 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 HMGN5P82970 282 aaKnown RBP5.49□□□□□ -1.53
SCFD1-208ENST00000553278 PRKCEQ02156 737 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 SULT2A1Q06520 285 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 DPYSQ14117 519 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 HNF4GQ14541 408 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 TRADDQ15628 312 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 STXBP2Q15833 593 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 ELFN2Q5R3F8 820 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 MANEAQ5SRI9 462 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 STRIP1Q5VSL9 837 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 FAM46CQ5VWP2 391 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 PRSS55Q6UWB4 352 aaPredicted RBP5.49□□□□□ -1.53
SCFD1-208ENST00000553278 BTNL8Q6UX41 500 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 CFAP206Q8IYR0 622 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 ARHGAP24Q8N264 748 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 RASGEF1AQ8N9B8 481 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 THAP8Q8NA92 274 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 DENND6BQ8NEG7 585 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 MPLKIPQ8TAP9 179 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 P2RX5Q93086 422 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 PIGTQ969N2 578 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 DTD2Q96FN9 168 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 SAMD8Q96LT4 415 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 ZNF559Q9BR84 538 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 TEX13BQ9BXU2 312 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 TM6SF1Q9BZW5 370 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 DDX47Q9H0S4 455 aaKnown RBP5.49□□□□□ -1.53
SCFD1-208ENST00000553278 TSPYL1Q9H0U9 437 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 LRMDAQ9H2I8 198 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 GPN1Q9HCN4 374 aaPredicted RBP5.49□□□□□ -1.53
SCFD1-208ENST00000553278 NOX4Q9NPH5 578 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 KLHL9Q9P2J3 617 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 UBQLN2Q9UHD9 624 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 EXOC7Q9UPT5 735 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 JRKLQ9Y4A0 524 aa5.49□□□□□ -1.53
SCFD1-208ENST00000553278 FAM205AQ6ZU69 1335 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 TAF1P21675 1872 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 HEG1Q9ULI3 1381 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 ADAM10O14672 748 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms