RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 APOL1O14791 398 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 PPP1R12AO14974 1030 aaPredicted RBP10.08□□□□□ -0.8
VPS29-208ENST00000550267 STX7O15400 261 aaKnown RBP10.08□□□□□ -0.8
VPS29-208ENST00000550267 DIAPH2O60879 1101 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 KLHL18O94889 574 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 UGT2B7P16662 529 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 NFKB1P19838 968 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 ITGAXP20702 1163 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 PTPN3P26045 913 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 PDHA2P29803 388 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 PRLHRP49683 370 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 KRTAP10-9P60411 292 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 PSMA6P60900 246 aaKnown RBP10.08□□□□□ -0.8
VPS29-208ENST00000550267 Q0VFX4 171 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 MFAP5Q13361 173 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 SLC9A4Q6AI14 798 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 SARM1Q6SZW1 724 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 SASS6Q6UVJ0 657 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 KIRREL2Q6UWL6 708 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 ISLR2Q6UXK2 745 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 GFRALQ6UXV0 394 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 RBM43Q6ZSC3 357 aaKnown RBP10.08□□□□□ -0.8
VPS29-208ENST00000550267 SHISA6Q6ZSJ9 500 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 CPLX3Q8WVH0 158 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 NR4A3Q92570 626 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.08□□□□□ -0.8
VPS29-208ENST00000550267 POM121Q96HA1 1249 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 THOC3Q96J01 351 aaKnown RBP10.08□□□□□ -0.8
VPS29-208ENST00000550267 TAAR6Q96RI8 345 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 TRIM56Q9BRZ2 755 aaKnown RBP10.08□□□□□ -0.8
VPS29-208ENST00000550267 NDC1Q9BTX1 674 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 OR52A5Q9H2C5 316 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 ASB8Q9H765 288 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 COG4Q9H9E3 785 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 ANO10Q9NW15 660 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 SH3BGRL2Q9UJC5 107 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 ICKQ9UPZ9 632 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 CELSR1Q9NYQ6 3014 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 NUP210LQ5VU65 1888 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 A0A087X0T9 212 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 C19orf84I3L1E1 186 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 SRP72O76094 671 aaKnown RBP10.07□□□□□ -0.8
VPS29-208ENST00000550267 FAM228BP0C875 321 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 TNNT3P45378 269 aaPredicted RBP10.07□□□□□ -0.8
VPS29-208ENST00000550267 DYNLT1P63172 113 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 BOP1Q14137 746 aaKnown RBP10.07□□□□□ -0.8
VPS29-208ENST00000550267 NFKBIBQ15653 356 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 SLC1A5Q15758 541 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 NKG7Q16617 165 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 TUBB8Q3ZCM7 444 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 TLDC1Q6P9B6 456 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 UNC5AQ6ZN44 842 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 OVCH1Q7RTY7 1134 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 RFX6Q8HWS3 928 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 DNAJC22Q8N4W6 341 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 IPMKQ8NFU5 416 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 FKBP10Q96AY3 582 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 NACC2Q96BF6 587 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 DCUN1D1Q96GG9 259 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 OXNAD1Q96HP4 312 aaPredicted RBP10.07□□□□□ -0.8
VPS29-208ENST00000550267 OR2A14Q96R47 310 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 MESP1Q9BRJ9 268 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 SOX17Q9H6I2 414 aaPredicted RBP10.07□□□□□ -0.8
VPS29-208ENST00000550267 MVB12BQ9H7P6 319 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 SPHK1Q9NYA1 384 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 CTTNBP2NLQ9P2B4 639 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 ARL5AQ9Y689 179 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 ZFHX3Q15911 3703 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 PCM1Q15154 2024 aa10.07□□□□□ -0.8
VPS29-208ENST00000550267 POLQO75417 2590 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 NF1P21359 2839 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 A0A0J9YY10 115 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 C17orf113A0A1B0GUU1 675 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 C3orf70A6NLC5 250 aaPredicted RBP10.06□□□□□ -0.8
VPS29-208ENST00000550267 ZNF487B1APH4 448 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 PRICKLE3O43900 615 aaPredicted RBP10.06□□□□□ -0.8
VPS29-208ENST00000550267 UNC5CO95185 931 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 EPOP01588 193 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 CA7P43166 264 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 XIAPP98170 497 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 WASHC5Q12768 1159 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 RBBP7Q16576 425 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 STX1AQ16623 288 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 ZNF658BQ4V348 819 aaPredicted RBP10.06□□□□□ -0.8
VPS29-208ENST00000550267 ALKBH5Q6P6C2 394 aaKnown RBP10.06□□□□□ -0.8
VPS29-208ENST00000550267 TMEM207Q6UWW9 146 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 RPTNQ6XPR3 784 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 SPNS3Q6ZMD2 512 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 TTLL10Q6ZVT0 673 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 MICALCLQ6ZW33 695 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 COX15Q7KZN9 410 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 CDH24Q86UP0 819 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 FAM20CQ8IXL6 584 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 OR11G2Q8NGC1 345 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 OR4K2Q8NGD2 314 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 FLVCR1-AS1Q8TAF5 88 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.06□□□□□ -0.8
VPS29-208ENST00000550267 TFGQ92734 400 aaPredicted RBP10.06□□□□□ -0.8
VPS29-208ENST00000550267 LMF1Q96S06 567 aa10.06□□□□□ -0.8
VPS29-208ENST00000550267 MAK16Q9BXY0 300 aaKnown RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms