RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 RPS14P62263 151 aaKnown RBP9.62□□□□□ -0.87
SS18-205ENST00000542420 TEAD2Q15562 447 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 ZNF284Q2VY69 593 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 SLC36A3Q495N2 470 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 FAM98BQ52LJ0 330 aaKnown RBP9.62□□□□□ -0.87
SS18-205ENST00000542420 FBXO48Q5FWF7 155 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 RABL3Q5HYI8 236 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 ASTLQ6HA08 431 aaPredicted RBP9.62□□□□□ -0.87
SS18-205ENST00000542420 GLYATQ6IB77 296 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 PSRC1Q6PGN9 363 aaPredicted RBP9.62□□□□□ -0.87
SS18-205ENST00000542420 FBXO46Q6PJ61 603 aaPredicted RBP9.62□□□□□ -0.87
SS18-205ENST00000542420 SLC2A7Q6PXP3 512 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 TECPR1Q7Z6L1 1165 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 ADGRG2Q8IZP9 1017 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 PNPT1Q8TCS8 783 aaKnown RBP9.62□□□□□ -0.87
SS18-205ENST00000542420 BIRC7Q96CA5 298 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 RPL10LQ96L21 214 aaKnown RBP9.62□□□□□ -0.87
SS18-205ENST00000542420 SPATA9Q9BWV2 254 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 BRF2Q9HAW0 419 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 TLR9Q9NR96 1032 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 INIPQ9NRY2 104 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 INTS7Q9NVH2 962 aaKnown RBP9.62□□□□□ -0.87
SS18-205ENST00000542420 IL36AQ9UHA7 158 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 AURKCQ9UQB9 309 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 RNF11Q9Y3C5 154 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 NEUROG3Q9Y4Z2 214 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 LRRK1Q38SD2 2015 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 CROCCQ5TZA2 2017 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 ACOX3O15254 700 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 PGRP06401 933 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 ETS2P15036 469 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 HOXB9P17482 250 aaPredicted RBP9.62□□□□□ -0.87
SS18-205ENST00000542420 ITGB6P18564 788 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 EPORP19235 508 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 ITGB8P26012 769 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 HNF4AP41235 474 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 CASP2P42575 452 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 ALDH3B2P48448 385 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 PRLHRP49683 370 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 ATXN3P54252 364 aaPredicted RBP9.62□□□□□ -0.87
SS18-205ENST00000542420 CYP4F3Q08477 520 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 MERTKQ12866 999 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 MTAPQ13126 283 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 C18orf21Q32NC0 220 aaPredicted RBP9.62□□□□□ -0.87
SS18-205ENST00000542420 PLPP4Q5VZY2 271 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 KRT80Q6KB66 452 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 ERAP2Q6P179 960 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 SCIMPQ6UWF3 145 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 AMIGO2Q86SJ2 522 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 CALHM3Q86XJ0 350 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 SVOPLQ8N434 492 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 BTN2A2Q8WVV5 523 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 PPP1R14BQ96C90 147 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 RMND5BQ96G75 393 aaPredicted RBP9.62□□□□□ -0.87
SS18-205ENST00000542420 ITCHQ96J02 903 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 HIC2Q96JB3 615 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 CCDC138Q96M89 665 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 SLC29A1Q99808 456 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 CIB1Q99828 191 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 SEMA6AQ9H2E6 1030 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 CLK4Q9HAZ1 481 aaKnown RBP9.62□□□□□ -0.87
SS18-205ENST00000542420 SIRT5Q9NXA8 310 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 SPATA7Q9P0W8 599 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 EGFL7Q9UHF1 273 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 TMPRSS11EQ9UL52 423 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 TMEM98Q9Y2Y6 226 aa9.62□□□□□ -0.87
SS18-205ENST00000542420 A0A0U1RQS6 177 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 C16orf96A6NNT2 1141 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 ZNF701M0R085 212 aaPredicted RBP9.61□□□□□ -0.87
SS18-205ENST00000542420 SOCS2O14508 198 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 WNT9AO14904 365 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 SEC22BO75396 215 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 CSPG5O95196 566 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 BCKDHAP12694 445 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 TIMP2P16035 220 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 TTKP33981 857 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 HPCAP84074 193 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 SRSF11Q05519 484 aaKnown RBP9.61□□□□□ -0.87
SS18-205ENST00000542420 PLA2G4EQ3MJ16 856 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 BCL7AQ4VC05 210 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 Q6ZVU0 165 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 EPHX4Q8IUS5 362 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 EID3Q8N140 333 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 TMEM132CQ8N3T6 1108 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 LIX1Q8N485 282 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 CELF5Q8N6W0 485 aaKnown RBP9.61□□□□□ -0.87
SS18-205ENST00000542420 BEND7Q8N7W2 519 aaPredicted RBP9.61□□□□□ -0.87
SS18-205ENST00000542420 ZNF548Q8NEK5 533 aaPredicted RBP9.61□□□□□ -0.87
SS18-205ENST00000542420 SLC22A17Q8WUG5 538 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 SELENOMQ8WWX9 145 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 ZNF583Q96ND8 569 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 ADI1Q9BV57 179 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 ACPTQ9BZG2 426 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 ZCCHC2Q9C0B9 1178 aaKnown RBP9.61□□□□□ -0.87
SS18-205ENST00000542420 RBM38Q9H0Z9 239 aaKnown RBP9.61□□□□□ -0.87
SS18-205ENST00000542420 ELOVL6Q9H5J4 265 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 RPF2Q9H7B2 306 aaKnown RBP9.61□□□□□ -0.87
SS18-205ENST00000542420 SMPD3Q9NY59 655 aaPredicted RBP9.61□□□□□ -0.87
SS18-205ENST00000542420 USE1Q9NZ43 259 aa9.61□□□□□ -0.87
SS18-205ENST00000542420 SRCAPQ6ZRS2 3230 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms