RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 PNMA8CA0A1B0GUJ8 204 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 TSPAN6O43657 245 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 PAPSS2O95340 614 aaPredicted RBP13.8□□□□□ -0.2
USP3-204ENST00000540797 TYRP1P17643 537 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 ETV3P41162 512 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 OC90Q02509 493 aaPredicted RBP13.8□□□□□ -0.2
USP3-204ENST00000540797 ELOCQ15369 112 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 C1orf220Q5T0J3 134 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 MZT2AQ6P582 158 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 CDCA3Q99618 268 aaPredicted RBP13.8□□□□□ -0.2
USP3-204ENST00000540797 RGPD1P0DJD0 1748 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 PTX3P26022 381 aaPredicted RBP13.8□□□□□ -0.2
USP3-204ENST00000540797 PREPP48147 710 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 NTHL1P78549 312 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 ELAVL3Q14576 367 aaKnown RBP13.8□□□□□ -0.2
USP3-204ENST00000540797 SLC8B1Q6J4K2 584 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 TNFAIP8L2Q6P589 184 aaPredicted RBP13.8□□□□□ -0.2
USP3-204ENST00000540797 OAFQ86UD1 273 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 DGAT2Q96PD7 388 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 GPR174Q9BXC1 333 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 TTC34A8MYJ7 566 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 ITGB1P05556 798 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 SRPRAP08240 638 aaKnown RBP13.8□□□□□ -0.2
USP3-204ENST00000540797 NR2F6P10588 404 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 CREB1P16220 341 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 ARCN1P48444 511 aaKnown RBP13.8□□□□□ -0.2
USP3-204ENST00000540797 SEPHS1P49903 392 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 DEFB103AP81534 67 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 AGTRAPQ6RW13 159 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 OR52J3Q8NH60 311 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 MAPK15Q8TD08 544 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 MAGEE1Q9HCI5 957 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 PLAGL1Q9UM63 463 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 STATHP02808 62 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 PRPS1L1P21108 318 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 CASRP41180 1078 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 SPIN4Q56A73 249 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 TOR1AIP1Q5JTV8 583 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 UXS1Q8NBZ7 420 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 RNASE11Q8TAA1 199 aaKnown RBP13.79□□□□□ -0.2
USP3-204ENST00000540797 SCAMP4Q969E2 229 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 ADAM7Q9H2U9 754 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 ZCCHC3Q9NUD5 404 aaKnown RBP13.79□□□□□ -0.2
USP3-204ENST00000540797 RGS17Q9UGC6 210 aaPredicted RBP13.79□□□□□ -0.2
USP3-204ENST00000540797 CYTH4Q9UIA0 394 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 TEX264Q9Y6I9 313 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 WWP2O00308 870 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 RNGTTO60942 597 aaKnown RBP13.79□□□□□ -0.2
USP3-204ENST00000540797 EPCAMP16422 314 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 ATP5A1P25705 553 aaKnown RBP13.79□□□□□ -0.2
USP3-204ENST00000540797 CREB5Q02930 508 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 PDK3Q15120 406 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 PRRT3Q5FWE3 981 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 TCEAL5Q5H9L2 206 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 GALNT5Q7Z7M9 940 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 OLFM1Q99784 485 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 NFKBIL1Q9UBC1 381 aaPredicted RBP13.79□□□□□ -0.2
USP3-204ENST00000540797 GALPQ9UBC7 116 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 FAM234BA2RU67 622 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 FADS2P1A8MWK0 482 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 KLK1P06870 262 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 ARHGAP40Q5TG30 622 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 PQLC1Q8N2U9 271 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 TSPAN14Q8NG11 270 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 OR9A1PQ8NGU1 263 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 SORCS1Q8WY21 1168 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 CEP295NLQ96MC4 621 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 OR2M4Q96R27 311 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 GPR22Q99680 433 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 SH3GL3Q99963 347 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 DERL2Q9GZP9 239 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 ZNF624Q9P2J8 865 aaPredicted RBP13.79□□□□□ -0.2
USP3-204ENST00000540797 NUP98P52948 1817 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 CCDC88AQ3V6T2 1871 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 REM1O75628 298 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 CST5P28325 142 aaPredicted RBP13.79□□□□□ -0.2
USP3-204ENST00000540797 PTPN5P54829 565 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 SNAPC1Q16533 368 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 ZNF852Q6ZMS4 543 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 FAM92BQ6ZTR7 304 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 TCEAL8Q8IYN2 117 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 C1orf52Q8N6N3 182 aaKnown RBP13.79□□□□□ -0.2
USP3-204ENST00000540797 SUN3Q8TAQ9 357 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 PIGXQ8TBF5 258 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 RIT1Q92963 219 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 TMLHEQ9NVH6 421 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 DNAAF2Q9NVR5 837 aaKnown RBP13.79□□□□□ -0.2
USP3-204ENST00000540797 ACSL5Q9ULC5 683 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 MYH13Q9UKX3 1938 aa13.79□□□□□ -0.2
USP3-204ENST00000540797 DUXAA6NLW8 204 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 UGT2B11O75310 529 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 CCR10P46092 362 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 SP140Q13342 867 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 PTCHD3Q3KNS1 767 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 SMYD5Q6GMV2 418 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 TRAF7Q6Q0C0 670 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 TXNDC5Q8NBS9 432 aaKnown RBP13.78□□□□□ -0.2
USP3-204ENST00000540797 CLPTM1LQ96KA5 538 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 WDR92Q96MX6 357 aa13.78□□□□□ -0.2
USP3-204ENST00000540797 NCDNQ9UBB6 729 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms