RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 LRRC38Q5VT99 294 aa11.14□□□□□ -0.63
CLSTN3-209ENST00000539982 YOD1Q5VVQ6 348 aaPredicted RBP11.14□□□□□ -0.63
CLSTN3-209ENST00000539982 RANBP10Q6VN20 620 aa11.14□□□□□ -0.63
CLSTN3-209ENST00000539982 KBTBD2Q8IY47 623 aa11.14□□□□□ -0.63
CLSTN3-209ENST00000539982 OR13C4Q8NGS5 318 aa11.14□□□□□ -0.63
CLSTN3-209ENST00000539982 CCDC110Q8TBZ0 833 aa11.14□□□□□ -0.63
CLSTN3-209ENST00000539982 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.14□□□□□ -0.63
CLSTN3-209ENST00000539982 C19orf43Q9BQ61 176 aa11.14□□□□□ -0.63
CLSTN3-209ENST00000539982 BPIFA3Q9BQP9 254 aa11.14□□□□□ -0.63
CLSTN3-209ENST00000539982 ZNF160Q9HCG1 818 aa11.14□□□□□ -0.63
CLSTN3-209ENST00000539982 CUTCQ9NTM9 273 aa11.14□□□□□ -0.63
CLSTN3-209ENST00000539982 CTSFQ9UBX1 484 aa11.14□□□□□ -0.63
CLSTN3-209ENST00000539982 RSPH14Q9UHP6 348 aa11.14□□□□□ -0.63
CLSTN3-209ENST00000539982 TRHDEQ9UKU6 1024 aa11.14□□□□□ -0.63
CLSTN3-209ENST00000539982 TDRKHQ9Y2W6 561 aaKnown RBP11.14□□□□□ -0.63
CLSTN3-209ENST00000539982 LIN7AO14910 233 aaPredicted RBP11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 KDM1AO60341 852 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 CST8O60676 142 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 ANXA9O76027 345 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 RASAL1O95294 804 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 ACPPP15309 386 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 PECAM1P16284 738 aaPredicted RBP11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 MAGP20916 626 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 FDXRP22570 491 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 SOX11P35716 441 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 ARHGAP25P42331 645 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 OR1D4P47884 311 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 CDKN1CP49918 316 aaPredicted RBP11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 SMSP52788 366 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 GEMP55040 296 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 CASP6P55212 293 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 TYRO3Q06418 890 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 MSLNQ13421 630 aaPredicted RBP11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 TFDP2Q14188 446 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 GRM7Q14831 915 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 FAM214AQ32MH5 1076 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 ZC3H12BQ5HYM0 836 aaKnown RBP11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 ATG9BQ674R7 924 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 MFSD7Q6UXD7 560 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 CDH24Q86UP0 819 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 FAM20CQ8IXL6 584 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 CLDN19Q8N6F1 224 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 OR5K2Q8NHB8 316 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 SLC35G2Q8TBE7 412 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 PSMF1Q92530 271 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 P3H4Q92791 437 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 MTFMTQ96DP5 389 aaKnown RBP11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 C14orf79Q96F83 325 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 CRB3Q9BUF7 120 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 FICDQ9BVA6 458 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 PACSIN1Q9BY11 444 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 ENAMQ9NRM1 1142 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 DDX56Q9NY93 547 aaKnown RBP11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 PTGFRNQ9P2B2 879 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 SH3BGRL2Q9UJC5 107 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 CAPN11Q9UMQ6 739 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 KLHL20Q9Y2M5 609 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 MRPS2Q9Y399 296 aaKnown RBP11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 PCNX1Q96RV3 2341 aa11.13□□□□□ -0.63
CLSTN3-209ENST00000539982 TRBV5-4A0A0C4DH59 114 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 C19orf84I3L1E1 186 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 MAP2K7O14733 419 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 AP2A2O94973 939 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 AP2A1O95782 977 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 SERPINC1P01008 464 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 SERPINA7P05543 415 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 PRR35P0CG20 571 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 ESRRAP11474 423 aaPredicted RBP11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 ACRV1P26436 265 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 PEBP1P30086 187 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 ADRA1AP35348 466 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 CDKN2BP42772 138 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 KIR3DL1P43629 444 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 ADORA2A-AS1P86434 159 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 KLC1Q07866 573 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 TAZQ16635 292 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 TCTE1Q5JU00 501 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 NDUFAF7Q7L592 441 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 SERPINA9Q86WD7 417 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 BRIX1Q8TDN6 353 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 SPOCK3Q9BQ16 436 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 MESP1Q9BRJ9 268 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 LUC7LQ9NQ29 371 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 PLAGL1Q9UM63 463 aa11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 LUC7L2Q9Y383 392 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 NIPBLQ6KC79 2804 aaeCLIP11.12□□□□□ -0.63
CLSTN3-209ENST00000539982 NSG1A0A0A6YYJ2 146 aa11.11□□□□□ -0.63
CLSTN3-209ENST00000539982 FITM1A5D6W6 292 aa11.11□□□□□ -0.63
CLSTN3-209ENST00000539982 HACD1B0YJ81 288 aa11.11□□□□□ -0.63
CLSTN3-209ENST00000539982 BHMG1C9JSJ3 638 aaPredicted RBP11.11□□□□□ -0.63
CLSTN3-209ENST00000539982 SLC19A2O60779 497 aa11.11□□□□□ -0.63
CLSTN3-209ENST00000539982 BMP10O95393 424 aa11.11□□□□□ -0.63
CLSTN3-209ENST00000539982 CLDN14O95500 239 aa11.11□□□□□ -0.63
CLSTN3-209ENST00000539982 ZGLP1P0C6A0 271 aa11.11□□□□□ -0.63
CLSTN3-209ENST00000539982 TMEM253P0C7T8 217 aa11.11□□□□□ -0.63
CLSTN3-209ENST00000539982 MYBL2P10244 700 aa11.11□□□□□ -0.63
CLSTN3-209ENST00000539982 MCM3P25205 808 aa11.11□□□□□ -0.63
CLSTN3-209ENST00000539982 MC4RP32245 332 aa11.11□□□□□ -0.63
CLSTN3-209ENST00000539982 GRIA3P42263 894 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms