RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 FGF21Q9NSA1 209 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 TAS2R13Q9NYV9 303 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 CIDEBQ9UHD4 219 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 A0A1W2PPV9 198 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 TCRBV9S1A1TA0A576 114 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 CTAGE15A4D2H0 777 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 FAM159BA6NKW6 160 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 CXorf49A8MYA2 514 aaPredicted RBP12.53□□□□□ -0.4
VPS28-216ENST00000533806 H3BMH7 237 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 VPS26AO75436 327 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 SPAG6O75602 509 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 STK17BO94768 372 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 TIAF1O95411 115 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 GSTA2P09210 222 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 CTAGE8P0CG41 777 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 PVRP15151 417 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 CDH3P22223 829 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 FDXRP22570 491 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 ACY1Q03154 408 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 TUBB3Q13509 450 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 CUL1Q13616 776 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 GLE1Q53GS7 698 aaKnown RBP12.53□□□□□ -0.4
VPS28-216ENST00000533806 HECTD2Q5U5R9 776 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 PAQR3Q6TCH7 311 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 C3orf62Q6ZUJ4 267 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 PIWIL4Q7Z3Z4 852 aaKnown RBP12.53□□□□□ -0.4
VPS28-216ENST00000533806 CTAGE6Q86UF2 777 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 TRIM73Q86UV7 250 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 PPP1R3BQ86XI6 285 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 CTAGE4Q8IX94 777 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 CPNE9Q8IYJ1 553 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 MAGEC3Q8TD91 643 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 EEF1AKMT1Q8WVE0 214 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 SKA2Q8WVK7 121 aaPredicted RBP12.53□□□□□ -0.4
VPS28-216ENST00000533806 DLG3Q92796 817 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 FOPNLQ96NB1 174 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 CCNL2Q96S94 520 aaPredicted RBP12.53□□□□□ -0.4
VPS28-216ENST00000533806 OLFM1Q99784 485 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 LRRC4CQ9HCJ2 640 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 FAM60AQ9NP50 221 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 ZFATQ9P243 1243 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 VWA7Q9Y334 891 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 PCDHB11Q9Y5F2 797 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 KLK4Q9Y5K2 254 aa12.53□□□□□ -0.4
VPS28-216ENST00000533806 ADAMTS20P59510 1910 aa12.52□□□□□ -0.4
VPS28-216ENST00000533806 SDK2Q58EX2 2172 aa12.52□□□□□ -0.4
VPS28-216ENST00000533806 A0A0J9YY10 115 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 K7ENP7 123 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 HCRTR1O43613 425 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 PIAS1O75925 651 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 WT1P19544 449 aaPredicted RBP12.52□□□□□ -0.41
VPS28-216ENST00000533806 MCM3P25205 808 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 ECHS1P30084 290 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 MAGEA4P43358 317 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 PGGT1BP53609 377 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 UCNP55089 124 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 SRSF6Q13247 344 aaKnown RBP12.52□□□□□ -0.41
VPS28-216ENST00000533806 MAP7Q14244 749 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 ARHGAP19Q14CB8 494 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 GPR19Q15760 415 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 TMTC4Q5T4D3 741 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 PWWP2BQ6NUJ5 590 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 UGT3A1Q6NUS8 523 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 TTC23LQ6PF05 361 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 INO80CQ6PI98 192 aaPredicted RBP12.52□□□□□ -0.41
VPS28-216ENST00000533806 TMEM207Q6UWW9 146 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 CDHR3Q6ZTQ4 885 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 STRA8Q7Z7C7 330 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 RELL1Q8IUW5 271 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 PALM2Q8IXS6 379 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 LRRC56Q8IYG6 542 aaPredicted RBP12.52□□□□□ -0.41
VPS28-216ENST00000533806 DNAJC22Q8N4W6 341 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 C2orf73Q8N5S3 287 aaPredicted RBP12.52□□□□□ -0.41
VPS28-216ENST00000533806 OR2A1Q8NGT9 310 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 OR9A1PQ8NGU1 263 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 OR8K5Q8NH50 307 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 SLC22A18Q96BI1 424 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 TCTN2Q96GX1 697 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 PDLIM5Q96HC4 596 aaKnown RBP12.52□□□□□ -0.41
VPS28-216ENST00000533806 RAB11FIP5Q9BXF6 653 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 FAM129AQ9BZQ8 928 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 KLHL25Q9H0H3 589 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 SYTL2Q9HCH5 934 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 PDE7BQ9NP56 450 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 ENAMQ9NRM1 1142 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 FAM114A2Q9NRY5 505 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 SPATA7Q9P0W8 599 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 ATMQ13315 3056 aa12.52□□□□□ -0.41
VPS28-216ENST00000533806 TEX51A0A1B0GUA7 166 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 TERTO14746 1132 aaKnown RBP12.51□□□□□ -0.41
VPS28-216ENST00000533806 RAD1O60671 282 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 SLC16A8O95907 504 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 CATP04040 527 aaKnown RBP12.51□□□□□ -0.41
VPS28-216ENST00000533806 MAP4P27816 1152 aaKnown RBP12.51□□□□□ -0.41
VPS28-216ENST00000533806 ARL4DP49703 201 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 TMPRSS3P57727 454 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 FASTKQ14296 549 aaKnown RBP12.51□□□□□ -0.41
VPS28-216ENST00000533806 BROXQ5VW32 411 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 KIAA1614Q5VZ46 1190 aa12.51□□□□□ -0.41
VPS28-216ENST00000533806 LRRC8EQ6NSJ5 796 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms