RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 TFCP2Q12800 502 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 SLC14A1Q13336 389 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 TNK1Q13470 666 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 ART3Q13508 389 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 EIF4EBP2Q13542 120 aaPredicted RBP5.39□□□□□ -1.55
CD44-236ENST00000533222 ZNF169Q14929 603 aaPredicted RBP5.39□□□□□ -1.55
CD44-236ENST00000533222 NOMO1Q15155 1222 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 ETFDHQ16134 617 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 SSX2Q16385 188 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 ZNF181Q2M3W8 571 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 MST1LQ2TV78 715 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 DPCR1Q3MIW9 517 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 SLC9B1Q4ZJI4 515 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 FBLN7Q53RD9 439 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 C6orf52Q5T4I8 152 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 FAM102BQ5T8I3 360 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 ITPRIPL1Q6GPH6 555 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 TCTN3Q6NUS6 607 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 NFRKBQ6P4R8 1299 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 BHLHB9Q6PI77 547 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 TTC33Q6PID6 262 aaPredicted RBP5.39□□□□□ -1.55
CD44-236ENST00000533222 DEGS2Q6QHC5 323 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 METAP1DQ6UB28 335 aaPredicted RBP5.39□□□□□ -1.55
CD44-236ENST00000533222 SUSD1Q6UWL2 747 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 KIAA0408Q6ZU52 694 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 CENPUQ71F23 418 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 RABEPKQ7Z6M1 372 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 LINC00523Q86TU6 105 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 IGFN1Q86VF2 1251 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 ECHDC2Q86YB7 292 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 THEM5Q8N1Q8 247 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 CPA6Q8N4T0 437 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 PACRGLQ8N7B6 248 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 ZNF527Q8NB42 609 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 FANCBQ8NB91 859 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 TMEM35BQ8NCS4 154 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 PSD4Q8NDX1 1056 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 REPS2Q8NFH8 660 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 TSPAN14Q8NG11 270 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 OR6F1Q8NGZ6 308 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 RP9Q8TA86 221 aaKnown RBP5.39□□□□□ -1.55
CD44-236ENST00000533222 ATOH1Q92858 354 aaPredicted RBP5.39□□□□□ -1.55
CD44-236ENST00000533222 TNFRSF14Q92956 283 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 MCUR1Q96AQ8 359 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 ISOC1Q96CN7 298 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 DUS3LQ96G46 650 aaKnown RBP5.39□□□□□ -1.55
CD44-236ENST00000533222 FAM89AQ96GI7 184 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 LURAP1Q96LR2 239 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 C10orf90Q96M02 699 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 RILPQ96NA2 401 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 LRFN5Q96NI6 719 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 TMEM246Q9BRR3 403 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 TMEM175Q9BSA9 504 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 C2orf88Q9BSF0 95 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 PAPOLGQ9BWT3 736 aaKnown RBP5.39□□□□□ -1.55
CD44-236ENST00000533222 CADM1Q9BY67 442 aaKnown RBP5.39□□□□□ -1.55
CD44-236ENST00000533222 FRMD8Q9BZ67 464 aaPredicted RBP5.39□□□□□ -1.55
CD44-236ENST00000533222 EBF3Q9H4W6 596 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 GREM2Q9H772 168 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 WDR26Q9H7D7 661 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 SEC61A2Q9H9S3 476 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 IL23AQ9NPF7 189 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 NANSQ9NR45 359 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 GSN-AS1Q9NRJ2 163 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 ZNF275Q9NSD4 429 aaPredicted RBP5.39□□□□□ -1.55
CD44-236ENST00000533222 TMEM184CQ9NVA4 438 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 INTS13Q9NVM9 706 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.39□□□□□ -1.55
CD44-236ENST00000533222 BFARQ9NZS9 450 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 ZIM2Q9NZV7 527 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 TXNDC16Q9P2K2 825 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 ARPP21Q9UBL0 812 aaPredicted RBP5.39□□□□□ -1.55
CD44-236ENST00000533222 RGS17Q9UGC6 210 aaPredicted RBP5.39□□□□□ -1.55
CD44-236ENST00000533222 POLLQ9UGP5 575 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 NDRG3Q9UGV2 375 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 COPS3Q9UNS2 423 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.39□□□□□ -1.55
CD44-236ENST00000533222 RBMX2Q9Y388 322 aaKnown RBP5.39□□□□□ -1.55
CD44-236ENST00000533222 A3GALT2U3KPV4 340 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 WIZO95785 1651 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 NEDD4P46934 1319 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 MAP2P11137 1827 aaKnown RBP5.39□□□□□ -1.55
CD44-236ENST00000533222 RIC1Q4ADV7 1423 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 TAF1P21675 1872 aa5.39□□□□□ -1.55
CD44-236ENST00000533222 A0A1W2PN81 502 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 UBE2QL1A1L167 161 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 FAM92AA1XBS5 289 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 NPEPPSL1A6NEC2 478 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 METTL15A6NJ78 407 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 MPTX1A8MV57 137 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 AHRRA9YTQ3 701 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 H7C4K7 107 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 M0QZK8 103 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 PSMD12O00232 456 aaPredicted RBP5.38□□□□□ -1.55
CD44-236ENST00000533222 CDC7O00311 574 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 PHYHO14832 338 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 TOX3O15405 576 aaPredicted RBP5.38□□□□□ -1.55
CD44-236ENST00000533222 PJA2O43164 708 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 THAP12O43422 761 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 RAD1O60671 282 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms