RNA–Protein interactions for RNA: ENST00000532550.1

PHRF1-204, Transcript of PHD and ring finger domains 1, humanhuman

TSL 3

Gene PHRF1, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-204ENST00000532550 NFS1Q9Y697 457 aa16.62■□□□□ 0.25
PHRF1-204ENST00000532550 AP1M2Q9Y6Q5 423 aa16.62■□□□□ 0.25
PHRF1-204ENST00000532550 C1orf105O95561 183 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 S1PR4O95977 384 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 RAB40ALP0C0E4 278 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 AGXTP21549 392 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 PEBP1P30086 187 aaKnown RBP16.61■□□□□ 0.25
PHRF1-204ENST00000532550 RORAP35398 523 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 GNG11P61952 73 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 RPS18P62269 152 aaKnown RBP16.61■□□□□ 0.25
PHRF1-204ENST00000532550 LONRF1Q17RB8 773 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 ZNF470Q6ECI4 717 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 CNSTQ6PJW8 725 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 PCGF5Q86SE9 256 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 LINC01555Q8NAE3 123 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 C9orf43Q8TAL5 461 aaPredicted RBP16.61■□□□□ 0.25
PHRF1-204ENST00000532550 FAM136AQ96C01 138 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 SIGLEC10Q96LC7 697 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 DPH2Q9BQC3 489 aaPredicted RBP16.61■□□□□ 0.25
PHRF1-204ENST00000532550 MENTQ9BUN1 341 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 NLNQ9BYT8 704 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 SPRTNQ9H040 489 aaPredicted RBP16.61■□□□□ 0.25
PHRF1-204ENST00000532550 DDX47Q9H0S4 455 aaKnown RBP16.61■□□□□ 0.25
PHRF1-204ENST00000532550 CCDC68Q9H2F9 335 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 C20orf96Q9NUD7 363 aaPredicted RBP16.61■□□□□ 0.25
PHRF1-204ENST00000532550 INTS7Q9NVH2 962 aaKnown RBP16.61■□□□□ 0.25
PHRF1-204ENST00000532550 ASIC3Q9UHC3 531 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 PLCL2Q9UPR0 1127 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 MAN2B2Q9Y2E5 1009 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 BOD1L1Q8NFC6 3051 aa16.61■□□□□ 0.25
PHRF1-204ENST00000532550 PCM1Q15154 2024 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 ZCWPW2A0A1B0GU75 182 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 USP27XA6NNY8 438 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 USP1O94782 785 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 MAGEA3P43357 314 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 NFKB2Q00653 900 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 CTBP1Q13363 440 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 UGT8Q16880 541 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 DEFB110Q30KQ9 67 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 LCN10Q6JVE6 187 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 TAX1BP1Q86VP1 789 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 FAM20CQ8IXL6 584 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 LMNTD2Q8IXW0 634 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 SYTL1Q8IYJ3 562 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 DNAJC22Q8N4W6 341 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 ZBTB2Q8N680 514 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 ENDOVQ8N8Q3 282 aaKnown RBP16.6■□□□□ 0.25
PHRF1-204ENST00000532550 LMNTD1Q8N9Z9 388 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 CALML6Q8TD86 181 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 THAP4Q8WY91 577 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 ABHD17AQ96GS6 310 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 ZNF71Q9NQZ8 489 aaPredicted RBP16.6■□□□□ 0.25
PHRF1-204ENST00000532550 PCYOX1Q9UHG3 505 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 TSR3Q9UJK0 312 aaKnown RBP16.6■□□□□ 0.25
PHRF1-204ENST00000532550 SNX7Q9UNH6 387 aa16.6■□□□□ 0.25
PHRF1-204ENST00000532550 C9J4A7 227 aa16.59■□□□□ 0.25
PHRF1-204ENST00000532550 MKRN2OSH3BPM6 223 aa16.59■□□□□ 0.25
PHRF1-204ENST00000532550 HCRTR1O43613 425 aa16.59■□□□□ 0.25
PHRF1-204ENST00000532550 MAGP20916 626 aa16.59■□□□□ 0.25
PHRF1-204ENST00000532550 ATP5DP30049 168 aa16.59■□□□□ 0.25
PHRF1-204ENST00000532550 BDKRB1P46663 353 aa16.59■□□□□ 0.25
PHRF1-204ENST00000532550 GABRA4P48169 554 aa16.59■□□□□ 0.25
PHRF1-204ENST00000532550 PTCHD3Q3KNS1 767 aa16.59■□□□□ 0.25
PHRF1-204ENST00000532550 RNASEH2BQ5TBB1 312 aaKnown RBP16.59■□□□□ 0.25
PHRF1-204ENST00000532550 TLDC1Q6P9B6 456 aa16.59■□□□□ 0.25
PHRF1-204ENST00000532550 ATG14Q6ZNE5 492 aa16.59■□□□□ 0.25
PHRF1-204ENST00000532550 PTRH1Q86Y79 214 aaKnown RBP16.59■□□□□ 0.25
PHRF1-204ENST00000532550 DENND6AQ8IWF6 608 aa16.59■□□□□ 0.25
PHRF1-204ENST00000532550 ZUFSPQ96AP4 578 aa16.59■□□□□ 0.25
PHRF1-204ENST00000532550 CAPZA3Q96KX2 299 aa16.59■□□□□ 0.25
PHRF1-204ENST00000532550 FBXO6Q9NRD1 293 aaPredicted RBP16.59■□□□□ 0.25
PHRF1-204ENST00000532550 GALPQ9UBC7 116 aa16.59■□□□□ 0.25
PHRF1-204ENST00000532550 RUVBL2Q9Y230 463 aaKnown RBP16.59■□□□□ 0.25
PHRF1-204ENST00000532550 KLHL20Q9Y2M5 609 aa16.59■□□□□ 0.25
PHRF1-204ENST00000532550 FAM169AQ9Y6X4 670 aa16.59■□□□□ 0.25
PHRF1-204ENST00000532550 DNALI1O14645 258 aaPredicted RBP16.58■□□□□ 0.24
PHRF1-204ENST00000532550 ZSCAN9O15535 394 aaPredicted RBP16.58■□□□□ 0.24
PHRF1-204ENST00000532550 SUV39H1O43463 412 aa16.58■□□□□ 0.24
PHRF1-204ENST00000532550 FKBP9O95302 570 aa16.58■□□□□ 0.24
PHRF1-204ENST00000532550 MATN4O95460 622 aa16.58■□□□□ 0.24
PHRF1-204ENST00000532550 PTK6Q13882 451 aa16.58■□□□□ 0.24
PHRF1-204ENST00000532550 GBX1Q14549 363 aa16.58■□□□□ 0.24
PHRF1-204ENST00000532550 KLHL38Q2WGJ6 581 aa16.58■□□□□ 0.24
PHRF1-204ENST00000532550 TTLL9Q3SXZ7 439 aa16.58■□□□□ 0.24
PHRF1-204ENST00000532550 CCSMST1Q4G0I0 132 aa16.58■□□□□ 0.24
PHRF1-204ENST00000532550 ACSBG2Q5FVE4 666 aa16.58■□□□□ 0.24
PHRF1-204ENST00000532550 ZC3H12BQ5HYM0 836 aaKnown RBP16.58■□□□□ 0.24
PHRF1-204ENST00000532550 PAPD7Q5XG87 772 aaKnown RBP16.58■□□□□ 0.24
PHRF1-204ENST00000532550 FIGLAQ6QHK4 219 aa16.58■□□□□ 0.24
PHRF1-204ENST00000532550 MCATQ8IVS2 390 aaKnown RBP16.58■□□□□ 0.24
PHRF1-204ENST00000532550 AGGF1Q8N302 714 aaeCLIP16.58■□□□□ 0.24
PHRF1-204ENST00000532550 ZNF655Q8N720 491 aaPredicted RBP16.58■□□□□ 0.24
PHRF1-204ENST00000532550 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.58■□□□□ 0.24
PHRF1-204ENST00000532550 GABPB2Q8TAK5 448 aaPredicted RBP16.58■□□□□ 0.24
PHRF1-204ENST00000532550 SLCO2A1Q92959 643 aa16.58■□□□□ 0.24
PHRF1-204ENST00000532550 PDLIM2Q96JY6 352 aa16.58■□□□□ 0.24
PHRF1-204ENST00000532550 C17orf62Q9BQA9 187 aa16.58■□□□□ 0.24
PHRF1-204ENST00000532550 NDC1Q9BTX1 674 aa16.58■□□□□ 0.24
PHRF1-204ENST00000532550 TXLNGQ9NUQ3 528 aa16.58■□□□□ 0.24
PHRF1-204ENST00000532550 EURLQ9NYK6 297 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms