RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ZSWIM1Q9BR11 485 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PIGQQ9BRB3 760 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SRSF8Q9BRL6 282 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM213AQ9BRX8 229 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 WDR83Q9BRX9 315 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC39A3Q9BRY0 314 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 C17orf80Q9BSJ5 609 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ABHD6Q9BV23 337 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 KATNB1Q9BVA0 655 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 FICDQ9BVA6 458 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ELOVL1Q9BW60 279 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 GATA5Q9BWX5 397 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TBC1D10AQ9BXI6 508 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 FSD1LQ9BXM9 530 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CACNG6Q9BXT2 260 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CADM1Q9BY67 442 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 RNF26Q9BY78 433 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 GLIS2Q9BZE0 524 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PUS3Q9BZE2 481 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 OSBPL8Q9BZF1 889 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CRNKL1Q9BZJ0 848 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 NMNAT2Q9BZQ4 307 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM129AQ9BZQ8 928 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 UBXN6Q9BZV1 441 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CIPCQ9C0C6 399 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 MTMR12Q9C0I1 747 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM39BQ9GZU3 492 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAB33BQ9H082 229 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 NUAK2Q9H093 628 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 DDX47Q9H0S4 455 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TSPYL1Q9H0U9 437 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 NAPBQ9H115 298 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 WNT5BQ9H1J7 359 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 S1PR5Q9H228 398 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CARD9Q9H257 536 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TTYH1Q9H313 450 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 VCX2Q9H322 139 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM245Q9H330 911 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 UBQLN3Q9H347 655 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 HIPK3Q9H422 1215 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 FZD8Q9H461 694 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 FN3KQ9H479 309 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 GOLPH3LQ9H4A5 285 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PLK3Q9H4B4 646 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PLEKHA4Q9H4M7 779 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 EHD1Q9H4M9 534 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF768Q9H5H4 540 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDCP1Q9H5V8 836 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 XKR8Q9H6D3 395 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAGIXQ9H6Y5 334 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CATSPERBQ9H7T0 1116 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 VCPKMTQ9H867 229 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 RMND5AQ9H871 391 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 MINDY3Q9H8M7 445 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SRD5A3Q9H8P0 318 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 GORASP2Q9H8Y8 452 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CNOT10Q9H9A5 744 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 RPF1Q9H9Y2 349 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 KIF9Q9HAQ2 790 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 RNPEPL1Q9HAU8 725 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAGEF1Q9HAY2 307 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 USP29Q9HBJ7 922 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CRLF2Q9HC73 371 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 GPN1Q9HCN4 374 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF304Q9HCX3 659 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CHMP1AQ9HD42 196 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PALMDQ9NP74 551 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 EQTNQ9NQ60 294 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 RPRD1BQ9NQG5 326 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ENTPD7Q9NQZ7 604 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 KLHL1Q9NR64 748 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 IL17RBQ9NRM6 502 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 DUSP22Q9NRW4 184 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 GLRX2Q9NS18 164 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 HOMER3Q9NSC5 361 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC6A13Q9NSD5 602 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM207AQ9NSI2 230 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM212BQ9NTI7 297 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 EXOC1Q9NV70 894 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TBC1D13Q9NVG8 400 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 DNAJC11Q9NVH1 559 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRMT7Q9NVM4 692 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CHCHD3Q9NX63 227 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 MTMR10Q9NXD2 777 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 QPCTLQ9NXS2 382 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 BARHL2Q9NY43 387 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CNOT2Q9NZN8 540 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR6C3Q9NZP0 311 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TBC1D7Q9P0N9 293 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ABI3Q9P2A4 366 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 KLHL8Q9P2G9 620 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 THEGQ9P2T0 379 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 IL36RNQ9UBH0 155 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 MGAT4CQ9UBM8 478 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 DKK2Q9UBU2 259 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 DNAJB4Q9UDY4 337 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 UBQLN2Q9UHD9 624 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 BAIAP2L1Q9UHR4 511 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATP6V1HQ9UI12 483 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC24A2Q9UI40 661 aa0.57□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms