RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CCNB2O95067 398 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 GBAP04062 536 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 RCVRNP35243 200 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 TEAD4Q15561 434 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 TECRLQ5HYJ1 363 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 UBXN11Q5T124 520 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 OR10T2Q8NGX3 314 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 AP3S1Q92572 193 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 AHCYL2Q96HN2 611 aaKnown RBP12.41□□□□□ -0.42
USP53-209ENST00000514665 ZDHHC3Q9NYG2 299 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 EURLQ9NYK6 297 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 RNF11Q9Y3C5 154 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 OAS3Q9Y6K5 1087 aaKnown RBP12.41□□□□□ -0.42
USP53-209ENST00000514665 PHRF1Q9P1Y6 1649 aaKnown RBP12.41□□□□□ -0.42
USP53-209ENST00000514665 ABHD14A-ACY1A0A1B0GW23 586 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 MTMR11A4FU01 709 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 SLC31A1O15431 190 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 CA12O43570 354 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 HIST1H2ABP04908 130 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 MAT2AP31153 395 aaKnown RBP12.41□□□□□ -0.42
USP53-209ENST00000514665 ETV4P43268 484 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 SLC11A1P49279 550 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 GPR17Q13304 367 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 HIST3H2AQ7L7L0 130 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 RGL4Q8IZJ4 473 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 OR2AP1Q8NGE2 309 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 STON2Q8WXE9 905 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 HIST1H2ACQ93077 130 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 SLC38A4Q969I6 547 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 SLC2A13Q96QE2 648 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 DERL2Q9GZP9 239 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 URADA6NGE7 173 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 IDSP22304 550 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 MYL9P24844 172 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 CAP1Q01518 475 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 HEPACAMQ14CZ8 416 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 MEP1AQ16819 746 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 PACRGLQ8N7B6 248 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 SMG8Q8ND04 991 aaKnown RBP12.4□□□□□ -0.42
USP53-209ENST00000514665 OR14C36Q8NHC7 312 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 IGSF8Q969P0 613 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 RIOK2Q9BVS4 552 aaKnown RBP12.4□□□□□ -0.42
USP53-209ENST00000514665 ZCCHC3Q9NUD5 404 aaKnown RBP12.4□□□□□ -0.42
USP53-209ENST00000514665 ZNF222Q9UK12 451 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 A0A1W2PRB8 838 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 EFCAB9A8MZ26 197 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 SSNA1O43805 119 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 SORBS2O94875 1100 aaKnown RBP12.4□□□□□ -0.42
USP53-209ENST00000514665 C9P02748 559 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 DNTTP04053 509 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 GATMP50440 423 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 SLBPQ14493 270 aaKnown RBP eCLIP12.4□□□□□ -0.42
USP53-209ENST00000514665 DPY19L1Q2PZI1 675 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 CGB2Q6NT52 195 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 C12orf43Q96C57 262 aaKnown RBP12.4□□□□□ -0.42
USP53-209ENST00000514665 KCNC2Q96PR1 638 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 KCNS3Q9BQ31 491 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 CNPPD1Q9BV87 410 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 CERS4Q9HA82 394 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 PRDM8Q9NQV8 689 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 FNIP2Q9P278 1114 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 FAM189A1O60320 539 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 TLR1Q15399 786 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 OR2T5Q6IEZ7 315 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 CXorf57Q6NSI4 855 aaKnown RBP12.4□□□□□ -0.42
USP53-209ENST00000514665 NANOGP8Q6NSW7 305 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 USP30Q70CQ3 517 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 OR10G2Q8NGC3 310 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 OR2T29Q8NH02 315 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 IMP4Q96G21 291 aaKnown RBP12.4□□□□□ -0.42
USP53-209ENST00000514665 FCRL4Q96PJ5 515 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 ADAMTS10Q9H324 1103 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 TLE6Q9H808 572 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 NANOGQ9H9S0 305 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 TMEM248Q9NWD8 314 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 MKS1Q9NXB0 559 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 PCDHGB3Q9Y5G1 929 aa12.4□□□□□ -0.42
USP53-209ENST00000514665 M0QX08 132 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 AURKAO14965 403 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 PI15O43692 258 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 SCN2BO60939 215 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 PAPSS2O95340 614 aaPredicted RBP12.39□□□□□ -0.43
USP53-209ENST00000514665 CYP11A1P05108 521 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 ACRP10323 421 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 DGKGP49619 791 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 TPTEP56180 551 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 TMPRSS11AQ6ZMR5 421 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 GET4Q7L5D6 327 aaPredicted RBP12.39□□□□□ -0.43
USP53-209ENST00000514665 CXXC5Q7LFL8 322 aaKnown RBP12.39□□□□□ -0.43
USP53-209ENST00000514665 CDH24Q86UP0 819 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 PDPRQ8NCN5 879 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 C2orf15Q8WU43 125 aaKnown RBP12.39□□□□□ -0.43
USP53-209ENST00000514665 TAMM41Q96BW9 452 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 ARMC5Q96C12 935 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 CEP295NLQ96MC4 621 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 POLR2J3Q9H1A7 115 aaKnown RBP12.39□□□□□ -0.43
USP53-209ENST00000514665 PREBQ9HCU5 417 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 MCUBQ9NWR8 336 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 FZD4Q9ULV1 537 aa12.39□□□□□ -0.43
USP53-209ENST00000514665 MAFKO60675 156 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms