RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 H2AFJQ9BTM1 129 aa19.59■□□□□ 0.73
USP53-208ENST00000514305 TMEM109Q9BVC6 243 aa19.59■□□□□ 0.73
USP53-208ENST00000514305 RNF215Q9Y6U7 377 aa19.59■□□□□ 0.73
USP53-208ENST00000514305 GCN1Q92616 2671 aaKnown RBP19.59■□□□□ 0.73
USP53-208ENST00000514305 TLDC2A0PJX2 215 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 TRIM49D1C9J1S8 452 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 C1QL1O75973 258 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 EML2O95834 649 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 SHBGP04278 402 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 KRT15P19012 456 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 PPM1FP49593 454 aaPredicted RBP19.58■□□□□ 0.72
USP53-208ENST00000514305 KPNA2P52292 529 aaKnown RBP19.58■□□□□ 0.72
USP53-208ENST00000514305 MAZP56270 477 aaKnown RBP19.58■□□□□ 0.72
USP53-208ENST00000514305 UBE2IP63279 158 aaKnown RBP19.58■□□□□ 0.72
USP53-208ENST00000514305 SP140Q13342 867 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 BMPR2Q13873 1038 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 PLCL1Q15111 1095 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 FAM83EQ2M2I3 478 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 KLC3Q6P597 504 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 LRIG3Q6UXM1 1119 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 CCDC81Q6ZN84 652 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 TIFABQ6ZNK6 161 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 SPRED1Q7Z699 444 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 PIM3Q86V86 326 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 ACVR1CQ8NER5 493 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 MCOLN3Q8TDD5 553 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 ACMSDQ8TDX5 336 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 EEF1AKMT1Q8WVE0 214 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 AHCYL2Q96HN2 611 aaKnown RBP19.58■□□□□ 0.72
USP53-208ENST00000514305 RAB11FIP5Q9BXF6 653 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 SLC40A1Q9NP59 571 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 SNX15Q9NRS6 342 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 SCHIP1Q9P0W5 487 aaPredicted RBP19.58■□□□□ 0.72
USP53-208ENST00000514305 ZNF624Q9P2J8 865 aaPredicted RBP19.58■□□□□ 0.72
USP53-208ENST00000514305 GALPQ9UBC7 116 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 PCDHGA7Q9Y5G6 932 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 KALRNO60229 2985 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 PIKFYVEQ9Y2I7 2098 aa19.58■□□□□ 0.72
USP53-208ENST00000514305 GOLGA6L10A6NI86 522 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 ZNF839A8K0R7 811 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 MATN4O95460 622 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 MT-ND3P03897 115 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 COL6A2P12110 1019 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 SLC5A2P31639 672 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 HSD17B2P37059 387 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 EPHA4P54764 986 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 GPLD1P80108 840 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 CFHR1Q03591 330 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 CHCHD2P9Q5T1J5 151 aaPredicted RBP19.57■□□□□ 0.72
USP53-208ENST00000514305 TMEM26Q6ZUK4 368 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 LCA5Q86VQ0 697 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 VRK3Q8IV63 474 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 GIMAP7Q8NHV1 300 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 SNRNP27Q8WVK2 155 aaKnown RBP19.57■□□□□ 0.72
USP53-208ENST00000514305 PATE1Q8WXA2 126 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 ISL2Q96A47 359 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 WBP1Q96G27 269 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 SLC30A3Q99726 388 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 DPYSL5Q9BPU6 564 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 DERL2Q9GZP9 239 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 KIR3DX1Q9H7L2 352 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 CAB39LQ9H9S4 337 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 NMRAL1Q9HBL8 299 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 CAMSAP3Q9P1Y5 1249 aaPredicted RBP19.57■□□□□ 0.72
USP53-208ENST00000514305 PISDQ9UG56 409 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 TBK1Q9UHD2 729 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 LNPEPQ9UIQ6 1025 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 ATXN7L1Q9ULK2 861 aaPredicted RBP19.57■□□□□ 0.72
USP53-208ENST00000514305 LOXL2Q9Y4K0 774 aa19.57■□□□□ 0.72
USP53-208ENST00000514305 CFAP20Q9Y6A4 193 aaKnown RBP19.57■□□□□ 0.72
USP53-208ENST00000514305 A0A096LPK6 155 aa19.56■□□□□ 0.72
USP53-208ENST00000514305 LILRA5A6NI73 299 aa19.56■□□□□ 0.72
USP53-208ENST00000514305 K7ENP7 123 aa19.56■□□□□ 0.72
USP53-208ENST00000514305 PSIP1O75475 530 aaKnown RBP19.56■□□□□ 0.72
USP53-208ENST00000514305 C2P06681 752 aa19.56■□□□□ 0.72
USP53-208ENST00000514305 ENO2P09104 434 aaPredicted RBP19.56■□□□□ 0.72
USP53-208ENST00000514305 LTA4HP09960 611 aaKnown RBP19.56■□□□□ 0.72
USP53-208ENST00000514305 CCDC166P0CW27 439 aa19.56■□□□□ 0.72
USP53-208ENST00000514305 AMD1P17707 334 aa19.56■□□□□ 0.72
USP53-208ENST00000514305 TIAL1Q01085 375 aaKnown RBP eCLIP19.56■□□□□ 0.72
USP53-208ENST00000514305 CLN3Q13286 438 aa19.56■□□□□ 0.72
USP53-208ENST00000514305 CLPPQ16740 277 aaPredicted RBP19.56■□□□□ 0.72
USP53-208ENST00000514305 INO80CQ6PI98 192 aaPredicted RBP19.56■□□□□ 0.72
USP53-208ENST00000514305 UBE2R2Q712K3 238 aaPredicted RBP19.56■□□□□ 0.72
USP53-208ENST00000514305 HDXQ7Z353 690 aa19.56■□□□□ 0.72
USP53-208ENST00000514305 CEP97Q8IW35 865 aa19.56■□□□□ 0.72
USP53-208ENST00000514305 SFTPA2Q8IWL1 248 aa19.56■□□□□ 0.72
USP53-208ENST00000514305 FBXO15Q8NCQ5 510 aaPredicted RBP19.56■□□□□ 0.72
USP53-208ENST00000514305 OR10G6Q8NH81 332 aa19.56■□□□□ 0.72
USP53-208ENST00000514305 ASB11Q8WXH4 323 aa19.56■□□□□ 0.72
USP53-208ENST00000514305 CCNL2Q96S94 520 aaPredicted RBP19.56■□□□□ 0.72
USP53-208ENST00000514305 CMKLR1Q99788 373 aa19.56■□□□□ 0.72
USP53-208ENST00000514305 STMN4Q9H169 189 aaPredicted RBP19.56■□□□□ 0.72
USP53-208ENST00000514305 KCNK4Q9NYG8 393 aa19.56■□□□□ 0.72
USP53-208ENST00000514305 CTNNAL1Q9UBT7 734 aa19.56■□□□□ 0.72
USP53-208ENST00000514305 TDRKHQ9Y2W6 561 aaKnown RBP19.56■□□□□ 0.72
USP53-208ENST00000514305 ATMQ13315 3056 aa19.56■□□□□ 0.72
USP53-208ENST00000514305 ZFC3H1O60293 1989 aaKnown RBP19.55■□□□□ 0.72
USP53-208ENST00000514305 UQCRHLA0A096LP55 91 aa19.55■□□□□ 0.72
USP53-208ENST00000514305 SMIM23A6NLE4 172 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms