RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 RIMKLBQ9ULI2 386 aa11.11□□□□□ -0.63
HMGCS1-204ENST00000507293 TCAF1Q9Y4C2 921 aa11.11□□□□□ -0.63
HMGCS1-204ENST00000507293 RELNP78509 3460 aa11.11□□□□□ -0.63
HMGCS1-204ENST00000507293 ICE1Q9Y2F5 2266 aa11.11□□□□□ -0.63
HMGCS1-204ENST00000507293 DOCK10Q96BY6 2186 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 USP9YO00507 2555 aaPredicted RBP11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 MASP2O00187 686 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 SEMA7AO75326 666 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 APOA4P06727 396 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 CD63P08962 238 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 RNF224P0DH78 156 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 MRPL49Q13405 166 aaKnown RBP11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 SNX1Q13596 522 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 GRB7Q14451 532 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 NKAIN1Q4KMZ8 207 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 DCAF10Q5QP82 559 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 MRPL14Q6P1L8 145 aaKnown RBP11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 UNC5DQ6UXZ4 953 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 PPP1R32Q7Z5V6 425 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 LDB1Q86U70 411 aaPredicted RBP11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 SLC13A5Q86YT5 568 aaPredicted RBP11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 DCUN1D3Q8IWE4 304 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 CLEC1AQ8NC01 280 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 PPHLN1Q8NEY8 458 aaKnown RBP11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 SSC4DQ8WTU2 575 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 ASZ1Q8WWH4 475 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 MENTQ9BUN1 341 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 FRMD8P1Q9BZ68 369 aaPredicted RBP11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 SLC29A3Q9BZD2 475 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 ZNF148Q9UQR1 794 aa11.1□□□□□ -0.63
HMGCS1-204ENST00000507293 KRT86O43790 486 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 GPC4O75487 556 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 IGHEP01854 428 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 RPN2P04844 631 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 APRTP07741 180 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 UMODP07911 640 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 ZSCAN5DPP0CG00 497 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 ITGAXP20702 1163 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 CD9P21926 228 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 PPARGP37231 505 aaPredicted RBP11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 GCGRP47871 477 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 MYBPC3Q14896 1274 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 TMED2Q15363 201 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 CYP2A13Q16696 494 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 PLEKHN1Q494U1 663 aaPredicted RBP11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 C4orf17Q53FE4 359 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 AARS2Q5JTZ9 985 aaKnown RBP11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 NLRP9Q7RTR0 991 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 MCATQ8IVS2 390 aaKnown RBP11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 GALNT16Q8N428 558 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 OR2L8Q8NGY9 312 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 DLG3Q92796 817 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 PTERQ96BW5 349 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 C19orf60Q96EN9 201 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 CARD6Q9BX69 1037 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 SLC22A11Q9NSA0 550 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 CATSPERZQ9NTU4 200 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 PAK5Q9P286 719 aa11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 MARCH4Q9P2E8 410 aaPredicted RBP11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 PLEKHB1Q9UF11 243 aaPredicted RBP11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 SPTAN1Q13813 2472 aaKnown RBP11.09□□□□□ -0.63
HMGCS1-204ENST00000507293 COL12A1Q99715 3063 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 SPTBN1Q01082 2364 aaKnown RBP11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 A0A1B0GX78 115 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 PRMT5O14744 637 aaPredicted RBP11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 RASGRF2O14827 1237 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 S1PR4O95977 384 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 ALPPP05187 535 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 ALAS2P22557 587 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 MCM3P25205 808 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 VARSP26640 1264 aaKnown RBP11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 AOAHP28039 575 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 BDKRB1P46663 353 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 ARSFP54793 590 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 SESN2P58004 480 aaPredicted RBP11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 EIF2S3LQ2VIR3 472 aaKnown RBP11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 FCRL6Q6DN72 434 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 PTRHD1Q6GMV3 140 aaKnown RBP11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 FIGLAQ6QHK4 219 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 TTLL10Q6ZVT0 673 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 COX15Q7KZN9 410 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 IQCKQ8N0W5 287 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 RNF10Q8N5U6 811 aaKnown RBP11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 CCDC89Q8N998 374 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 SPC24Q8NBT2 197 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 PRR7Q8TB68 274 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 PEX13Q92968 403 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 FKBP10Q96AY3 582 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 SLC22A18Q96BI1 424 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 SNRNP40Q96DI7 357 aaKnown RBP11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 ILKAPQ9H0C8 392 aaPredicted RBP11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 ZNF552Q9H707 407 aaPredicted RBP11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 CHRAC1Q9NRG0 131 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 INTS7Q9NVH2 962 aaKnown RBP11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 ASF1BQ9NVP2 202 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 CUEDC1Q9NWM3 386 aaPredicted RBP11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 ANAPC5Q9UJX4 755 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 SLC39A10Q9ULF5 831 aa11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 B3GNT3Q9Y2A9 372 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms