RNA–Protein interactions for RNA: ENST00000497580.5

GAPVD1-220, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 2

Gene GAPVD1, Length 3,720 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-220ENST00000497580 ZNF490Q9ULM2 529 aaPredicted RBP12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 CLCA3PQ9Y6N3 262 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 ATP6V1G2-DDX39BF2Z307 99 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 PTHP01270 115 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 SERPINF2P08697 491 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 POU3F3P20264 500 aaPredicted RBP12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 SPATS1Q496A3 300 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 IDO2Q6ZQW0 420 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 PLEKHM3Q6ZWE6 761 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 SLC13A3Q8WWT9 602 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 ZNF566Q969W8 418 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 RNF170Q96K19 258 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 KLHL5Q96PQ7 755 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 PLK4O00444 970 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 ECI2O75521 394 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 AKT1P31749 480 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 CD86P42081 329 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 ELP6Q0PNE2 266 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 STK11Q15831 433 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 SPANXN4Q5MJ08 99 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 PAQR3Q6TCH7 311 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 LAX1Q8IWV1 398 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 SDR16C5Q8N3Y7 309 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 MALT1Q9UDY8 824 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 SCN1AP35498 2009 aa12.78□□□□□ -0.36
GAPVD1-220ENST00000497580 ANKRD28O15084 1053 aa12.77□□□□□ -0.36
GAPVD1-220ENST00000497580 JUNDP17535 347 aa12.77□□□□□ -0.36
GAPVD1-220ENST00000497580 PTPRAP18433 802 aa12.77□□□□□ -0.36
GAPVD1-220ENST00000497580 SLC19A1P41440 591 aa12.77□□□□□ -0.36
GAPVD1-220ENST00000497580 QPRTQ15274 297 aa12.77□□□□□ -0.36
GAPVD1-220ENST00000497580 CPZQ66K79 652 aa12.77□□□□□ -0.36
GAPVD1-220ENST00000497580 GPRIN3Q6ZVF9 776 aa12.77□□□□□ -0.36
GAPVD1-220ENST00000497580 VTCN1Q7Z7D3 282 aa12.77□□□□□ -0.36
GAPVD1-220ENST00000497580 SLC51BQ86UW2 128 aa12.77□□□□□ -0.36
GAPVD1-220ENST00000497580 MRGPRX2Q96LB1 330 aa12.77□□□□□ -0.36
GAPVD1-220ENST00000497580 FRMD6Q96NE9 622 aa12.77□□□□□ -0.36
GAPVD1-220ENST00000497580 GON7Q9BXV9 100 aa12.77□□□□□ -0.36
GAPVD1-220ENST00000497580 SMURF1Q9HCE7 757 aa12.77□□□□□ -0.36
GAPVD1-220ENST00000497580 SYTL2Q9HCH5 934 aa12.77□□□□□ -0.36
GAPVD1-220ENST00000497580 ZIM2Q9NZV7 527 aa12.77□□□□□ -0.36
GAPVD1-220ENST00000497580 SNX7Q9UNH6 387 aa12.77□□□□□ -0.36
GAPVD1-220ENST00000497580 ASB1Q9Y576 335 aa12.77□□□□□ -0.36
GAPVD1-220ENST00000497580 CIB4A0PJX0 185 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 PER2O15055 1255 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 TREHO43280 583 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 ARHGEF15O94989 841 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 SLC2A3P11169 496 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 ESCO2Q56NI9 601 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 SLC46A3Q7Z3Q1 461 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 KRTCAP2Q8N6L1 136 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 TPD52L3Q96J77 140 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 RAD18Q9NS91 495 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 PCDHB5Q9Y5E4 795 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 TIMM13Q9Y5L4 95 aaPredicted RBP12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 WBP4O75554 376 aaKnown RBP12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 SNX4O95219 450 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 S1PR4O95977 384 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 B3GALT4O96024 378 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 PRLP01236 227 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 RPS3P23396 243 aaKnown RBP eCLIP12.77□□□□□ -0.375e-28■■■□□ 15.7
GAPVD1-220ENST00000497580 UGT2B10P36537 528 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 GNASQ5JWF2 1037 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 PDZK1Q5T2W1 519 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 KIAA1614Q5VZ46 1190 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 KLHL17Q6TDP4 642 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 CCDC71Q8IV32 467 aaPredicted RBP12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 FBXL6Q8N531 539 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 TSPEARQ8WU66 669 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 ISG20Q96AZ6 181 aaKnown RBP12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 FAM167AQ96KS9 214 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 PRKD2Q9BZL6 878 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 AS3MTQ9HBK9 375 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 BRWD3Q6RI45 1802 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 LAMA3Q16787 3333 aa12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 MN1Q10571 1320 aaPredicted RBP12.77□□□□□ -0.37
GAPVD1-220ENST00000497580 PLD2O14939 933 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 STX7O15400 261 aaKnown RBP12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 ITGAMP11215 1152 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 ZNF250P15622 560 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 FAM189BP81408 668 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 NFE2L1Q14494 772 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 RFTN2Q52LD8 501 aaPredicted RBP12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 AFG1LQ8WV93 481 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 PHF21AQ96BD5 680 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 COLEC11Q9BWP8 271 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 EVA1BQ9NVM1 165 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 GABRQQ9UN88 632 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 TP53P04637 393 aaPredicted RBP12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 PGRP06401 933 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 UROSP10746 265 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 DNAJB2P25686 324 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 TIE1P35590 1138 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 PIK3CBP42338 1070 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 NKX3-2P78367 333 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 HMGCS1Q01581 520 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 FXNQ16595 210 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 C18orf21Q32NC0 220 aaPredicted RBP12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 OR2T5Q6IEZ7 315 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 FAM83AQ86UY5 434 aa12.76□□□□□ -0.37
GAPVD1-220ENST00000497580 C10orf111Q8N326 155 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms