RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 EURLQ9NYK6 297 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 SLC2A6Q9UGQ3 507 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 AMFRQ9UKV5 643 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 NTNG1Q9Y2I2 539 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 KLHL20Q9Y2M5 609 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 PCDHGA10Q9Y5H3 936 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 CSAG2Q9Y5P2 127 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 TCRBV7S2A1N4TA0A589 114 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 KDM1AO60341 852 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 KLHL41O60662 606 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 ALOX12BO75342 701 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 IPO7O95373 1038 aaKnown RBP11.91□□□□□ -0.5
CPSF3-204ENST00000489403 PTMAP06454 111 aaKnown RBP11.91□□□□□ -0.5
CPSF3-204ENST00000489403 ALAS2P22557 587 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 GLRBP48167 497 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 RAB28P51157 221 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 CDH17Q12864 832 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 SEMA3AQ14563 771 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 DNAJC21Q5F1R6 531 aaKnown RBP11.91□□□□□ -0.5
CPSF3-204ENST00000489403 TSTD2Q5T7W7 516 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 AFTPHQ6ULP2 937 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 TTLL10Q6ZVT0 673 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 LINC00523Q86TU6 105 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 CUZD1Q86UP6 607 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 SLC22A15Q8IZD6 547 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 ZADH2Q8N4Q0 377 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 C2orf73Q8N5S3 287 aaPredicted RBP11.91□□□□□ -0.5
CPSF3-204ENST00000489403 DNAAF3Q8N9W5 541 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 DLG3Q92796 817 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 FKBP10Q96AY3 582 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 ZNF778Q96MU6 729 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 IL17FQ96PD4 163 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 BARD1Q99728 777 aaKnown RBP11.91□□□□□ -0.5
CPSF3-204ENST00000489403 SLC6A20Q9NP91 592 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 ATP13A2Q9NQ11 1180 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 CIDEBQ9UHD4 219 aa11.91□□□□□ -0.5
CPSF3-204ENST00000489403 TEX15Q9BXT5 2789 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 A0A1B0GX78 115 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 HEATR9A2RTY3 570 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 ANKUB1A6NFN9 424 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 IQCF5A8MTL0 148 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 SOCS6O14544 535 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 GPC4O75487 556 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 FTCDO95954 541 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 CD9P21926 228 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 MMP11P24347 488 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 ITGA3P26006 1051 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 ARSFP54793 590 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 ACVR1Q04771 509 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 HSPA14Q0VDF9 509 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 AIMP2Q13155 320 aaKnown RBP11.9□□□□□ -0.5
CPSF3-204ENST00000489403 GRB7Q14451 532 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 FCRL6Q6DN72 434 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 ZNF534Q76KX8 674 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 COX15Q7KZN9 410 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 OVCH1Q7RTY7 1134 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 PEX26Q7Z412 305 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 TAX1BP1Q86VP1 789 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 MCATQ8IVS2 390 aaKnown RBP11.9□□□□□ -0.5
CPSF3-204ENST00000489403 DCUN1D3Q8IWE4 304 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 UBL4BQ8N7F7 174 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.9□□□□□ -0.5
CPSF3-204ENST00000489403 ATG4AQ8WYN0 398 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 NACC2Q96BF6 587 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 SLC22A18Q96BI1 424 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 C5orf34Q96MH7 638 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 TTC1Q99614 292 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 SPSB2Q99619 263 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 ETNK1Q9HBU6 452 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 FBXL4Q9UKA2 621 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 RIMKLBQ9ULI2 386 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 SLC5A6Q9Y289 635 aa11.9□□□□□ -0.5
CPSF3-204ENST00000489403 COPG1Q9Y678 874 aaKnown RBP11.9□□□□□ -0.5
CPSF3-204ENST00000489403 DOCK10Q96BY6 2186 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 A0A0U1RQJ8 604 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 ERI2A8K979 691 aaKnown RBP11.89□□□□□ -0.51
CPSF3-204ENST00000489403 MIF4GDA9UHW6 222 aaKnown RBP11.89□□□□□ -0.51
CPSF3-204ENST00000489403 F8W8V4 182 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 DSCR3O14972 297 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 SUN1O94901 812 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 ONECUT2O95948 504 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 S1PR4O95977 384 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 ALBP02768 609 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 MCM3P25205 808 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 DCTP40126 519 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 GRIA1P42261 906 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 NKG7Q16617 165 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 HIF1AQ16665 826 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 PRAMEF13Q5VWM6 474 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 PPP1R21Q6ZMI0 780 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 KRT222Q8N1A0 295 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 OR2L8Q8NGY9 312 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 OR4L1Q8NH43 312 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 CFAP61Q8NHU2 1237 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 PPP4R1Q8TF05 950 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 UBE2Q2Q8WVN8 375 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 WDR77Q9BQA1 342 aaPredicted RBP11.89□□□□□ -0.51
CPSF3-204ENST00000489403 CARD6Q9BX69 1037 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 SLC26A1Q9H2B4 701 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 SOX17Q9H6I2 414 aaPredicted RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms