RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 PLAGL1Q9UM63 463 aa15.37■□□□□ 0.05
UPF3A-208ENST00000484246 PCDHB11Q9Y5F2 797 aa15.37■□□□□ 0.05
UPF3A-208ENST00000484246 B3GALT1Q9Y5Z6 326 aa15.37■□□□□ 0.05
UPF3A-208ENST00000484246 CHD6Q8TD26 2715 aa15.37■□□□□ 0.05
UPF3A-208ENST00000484246 USP24Q9UPU5 2620 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 CXorf49A8MYA2 514 aaPredicted RBP15.36■□□□□ 0.05
UPF3A-208ENST00000484246 POLR1CO15160 346 aaPredicted RBP15.36■□□□□ 0.05
UPF3A-208ENST00000484246 SLC16A5O15375 505 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 PRICKLE3O43900 615 aaPredicted RBP15.36■□□□□ 0.05
UPF3A-208ENST00000484246 WISP3O95389 354 aaPredicted RBP15.36■□□□□ 0.05
UPF3A-208ENST00000484246 C8GP07360 202 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 CDH3P22223 829 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 MCM3P25205 808 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 HSD17B2P37059 387 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 SEPHS1P49903 392 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 ACY1Q03154 408 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 PAQR3Q6TCH7 311 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 CAPN12Q6ZSI9 719 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 GPATCH11Q8N954 259 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 EIF1ADQ8N9N8 165 aaKnown RBP15.36■□□□□ 0.05
UPF3A-208ENST00000484246 OR9A1PQ8NGU1 263 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 OR8K5Q8NH50 307 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 ANKRD7Q92527 254 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 PDLIM5Q96HC4 596 aaKnown RBP15.36■□□□□ 0.05
UPF3A-208ENST00000484246 TRAPPC9Q96Q05 1148 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 GPR22Q99680 433 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 SPHK1Q9NYA1 384 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 SLC39A10Q9ULF5 831 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 TMEM184BQ9Y519 407 aaPredicted RBP15.36■□□□□ 0.05
UPF3A-208ENST00000484246 KLK4Q9Y5K2 254 aa15.36■□□□□ 0.05
UPF3A-208ENST00000484246 A0A0J9YY10 115 aa15.35■□□□□ 0.05
UPF3A-208ENST00000484246 FAM95CA0A1B0GW59 222 aa15.35■□□□□ 0.05
UPF3A-208ENST00000484246 RRP8O43159 456 aaKnown RBP15.35■□□□□ 0.05
UPF3A-208ENST00000484246 LIPCP11150 499 aa15.35■□□□□ 0.05
UPF3A-208ENST00000484246 ZNF37AP17032 561 aaPredicted RBP15.35■□□□□ 0.05
UPF3A-208ENST00000484246 SH3BP2P78314 561 aa15.35■□□□□ 0.05
UPF3A-208ENST00000484246 POU4F1Q01851 419 aa15.35■□□□□ 0.05
UPF3A-208ENST00000484246 MAP7Q14244 749 aa15.35■□□□□ 0.05
UPF3A-208ENST00000484246 KBTBD12Q3ZCT8 623 aa15.35■□□□□ 0.05
UPF3A-208ENST00000484246 CCSMST1Q4G0I0 132 aa15.35■□□□□ 0.05
UPF3A-208ENST00000484246 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.35■□□□□ 0.05
UPF3A-208ENST00000484246 PIWIL4Q7Z3Z4 852 aaKnown RBP15.35■□□□□ 0.05
UPF3A-208ENST00000484246 IFT20Q8IY31 132 aa15.35■□□□□ 0.05
UPF3A-208ENST00000484246 KCNE4Q8WWG9 221 aa15.35■□□□□ 0.05
UPF3A-208ENST00000484246 PPM1MQ96MI6 270 aa15.35■□□□□ 0.05
UPF3A-208ENST00000484246 IL17FQ96PD4 163 aa15.35■□□□□ 0.05
UPF3A-208ENST00000484246 RBBP8Q99708 897 aa15.35■□□□□ 0.05
UPF3A-208ENST00000484246 SLC12A9Q9BXP2 914 aa15.35■□□□□ 0.05
UPF3A-208ENST00000484246 NINJ2Q9NZG7 142 aa15.35■□□□□ 0.05
UPF3A-208ENST00000484246 TXNDC16Q9P2K2 825 aa15.35■□□□□ 0.05
UPF3A-208ENST00000484246 LNPEPQ9UIQ6 1025 aa15.35■□□□□ 0.05
UPF3A-208ENST00000484246 SLC9B1P1A6NJY1 282 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 ZNF839A8K0R7 811 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 STMND1H3BQB6 276 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 DLGAP3O95886 979 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 FOLR1P15328 257 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 ST6GAL1P15907 406 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 TAS2R39P59534 338 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 IL2P60568 153 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 TUBB4BP68371 445 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 CLN3Q13286 438 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 TUBB3Q13509 450 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 TMTC4Q5T4D3 741 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 MYO1HQ8N1T3 1032 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 C19orf47Q8N9M1 422 aaKnown RBP15.34■□□□□ 0.05
UPF3A-208ENST00000484246 LMNTD1Q8N9Z9 388 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 FBF1Q8TES7 1133 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 EEF1AKMT1Q8WVE0 214 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 LINGO1Q96FE5 620 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 ELMO2Q96JJ3 720 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 OR6C1Q96RD1 312 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 CDC42EP4Q9H3Q1 356 aaKnown RBP15.34■□□□□ 0.05
UPF3A-208ENST00000484246 APMAPQ9HDC9 416 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 FGF21Q9NSA1 209 aa15.34■□□□□ 0.05
UPF3A-208ENST00000484246 A0A1W2PPV9 198 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 ZBTB14O43829 449 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 EBLN1P0CF75 366 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 MAP4P27816 1152 aaKnown RBP15.33■□□□□ 0.04
UPF3A-208ENST00000484246 OAS2P29728 719 aaKnown RBP15.33■□□□□ 0.04
UPF3A-208ENST00000484246 PHBP35232 272 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 ARL4DP49703 201 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 TLE3Q04726 772 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 NAA25Q14CX7 972 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 ZKSCAN8Q15776 578 aaPredicted RBP15.33■□□□□ 0.04
UPF3A-208ENST00000484246 GRTP1Q5TC63 336 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 UBE2R2Q712K3 238 aaPredicted RBP15.33■□□□□ 0.04
UPF3A-208ENST00000484246 SPNS2Q8IVW8 549 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 SPACA3Q8IXA5 215 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 LRRN4CLQ8ND94 238 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 IFT81Q8WYA0 676 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 SMPDL3AQ92484 453 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 DLG3Q92796 817 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 ZNF501Q96CX3 271 aaPredicted RBP15.33■□□□□ 0.04
UPF3A-208ENST00000484246 TSPAN17Q96FV3 270 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 TCTN2Q96GX1 697 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 PKP4Q99569 1192 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 ACSS3Q9H6R3 686 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 PDE7BQ9NP56 450 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 ENAMQ9NRM1 1142 aa15.33■□□□□ 0.04
UPF3A-208ENST00000484246 SOHLH2Q9NX45 425 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms