RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 CAV1Q03135 178 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 MGAT5Q09328 741 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 TSTA3Q13630 321 aaPredicted RBP13.73□□□□□ -0.21
VAMP4-203ENST00000474047 MAP7Q14244 749 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 SLC5A12Q1EHB4 618 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 TEDDM1Q5T9Z0 273 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 CAPN12Q6ZSI9 719 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 NEK10Q6ZWH5 1172 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 TIPARPQ7Z3E1 657 aaKnown RBP13.73□□□□□ -0.21
VAMP4-203ENST00000474047 ZNF572Q7Z3I7 529 aaPredicted RBP13.73□□□□□ -0.21
VAMP4-203ENST00000474047 CNTN4Q8IWV2 1026 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 GPATCH11Q8N954 259 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 C19orf47Q8N9M1 422 aaKnown RBP13.73□□□□□ -0.21
VAMP4-203ENST00000474047 MNS1Q8NEH6 495 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 SPRY4Q9C004 299 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 INTS7Q9NVH2 962 aaKnown RBP13.73□□□□□ -0.21
VAMP4-203ENST00000474047 IRAK4Q9NWZ3 460 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 PADI1Q9ULC6 663 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 PTPRQQ9UMZ3 2332 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 EIF4E1BA6NMX2 242 aaKnown RBP13.73□□□□□ -0.21
VAMP4-203ENST00000474047 ZBTB14O43829 449 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 DLGAP3O95886 979 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 SYF2O95926 243 aaKnown RBP13.73□□□□□ -0.21
VAMP4-203ENST00000474047 MPC1LP0DKB6 136 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 LIFP15018 202 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 CYP2A7P20853 494 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 MCM3P25205 808 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 GBX1Q14549 363 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 STEAP4Q687X5 459 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 TRMT10BQ6PF06 316 aaKnown RBP13.73□□□□□ -0.21
VAMP4-203ENST00000474047 CCDC25Q86WR0 208 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 CPNE9Q8IYJ1 553 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 GPR135Q8IZ08 494 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 LMNTD1Q8N9Z9 388 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 OR9A1PQ8NGU1 263 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 ZNF501Q96CX3 271 aaPredicted RBP13.73□□□□□ -0.21
VAMP4-203ENST00000474047 SLC30A3Q99726 388 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 PCDHGA4Q9Y5G9 962 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 WDFY3Q8IZQ1 3526 aa13.73□□□□□ -0.21
VAMP4-203ENST00000474047 LOC101059948A0A1B0GTJ6 334 aa13.72□□□□□ -0.21
VAMP4-203ENST00000474047 ZNF839A8K0R7 811 aa13.72□□□□□ -0.21
VAMP4-203ENST00000474047 E7ESA3 106 aa13.72□□□□□ -0.21
VAMP4-203ENST00000474047 TP73O15350 636 aa13.72□□□□□ -0.21
VAMP4-203ENST00000474047 EIF3HO15372 352 aaKnown RBP eCLIP13.72□□□□□ -0.21
VAMP4-203ENST00000474047 CPNE3O75131 537 aaKnown RBP13.72□□□□□ -0.21
VAMP4-203ENST00000474047 PSIP1O75475 530 aaKnown RBP13.72□□□□□ -0.21
VAMP4-203ENST00000474047 KLK3P07288 261 aaPredicted RBP13.72□□□□□ -0.21
VAMP4-203ENST00000474047 ITGA1P56199 1179 aa13.72□□□□□ -0.21
VAMP4-203ENST00000474047 RHDQ02161 417 aa13.72□□□□□ -0.21
VAMP4-203ENST00000474047 PDAP1Q13442 181 aaKnown RBP13.72□□□□□ -0.21
VAMP4-203ENST00000474047 GRB7Q14451 532 aa13.72□□□□□ -0.21
VAMP4-203ENST00000474047 FASTKD3Q14CZ7 662 aaKnown RBP13.72□□□□□ -0.21
VAMP4-203ENST00000474047 CCSMST1Q4G0I0 132 aa13.72□□□□□ -0.21
VAMP4-203ENST00000474047 TAF1BQ53T94 588 aaPredicted RBP13.72□□□□□ -0.21
VAMP4-203ENST00000474047 LRRC8EQ6NSJ5 796 aa13.72□□□□□ -0.21
VAMP4-203ENST00000474047 CDHR3Q6ZTQ4 885 aa13.72□□□□□ -0.21
VAMP4-203ENST00000474047 LINC01555Q8NAE3 123 aa13.72□□□□□ -0.21
VAMP4-203ENST00000474047 KIF18AQ8NI77 898 aa13.72□□□□□ -0.21
VAMP4-203ENST00000474047 CD200R1Q8TD46 325 aa13.72□□□□□ -0.21
VAMP4-203ENST00000474047 CLIP3Q96DZ5 547 aa13.72□□□□□ -0.21
VAMP4-203ENST00000474047 UBL7Q96S82 380 aaPredicted RBP13.72□□□□□ -0.21
VAMP4-203ENST00000474047 SPATA7Q9P0W8 599 aa13.72□□□□□ -0.21
VAMP4-203ENST00000474047 SLC17A6Q9P2U8 582 aa13.72□□□□□ -0.21
VAMP4-203ENST00000474047 PABPN1LA6NDY0 278 aaKnown RBP13.71□□□□□ -0.21
VAMP4-203ENST00000474047 ARHGEF33A8MVX0 844 aa13.71□□□□□ -0.21
VAMP4-203ENST00000474047 E7EQ34 232 aa13.71□□□□□ -0.21
VAMP4-203ENST00000474047 KATNA1O75449 491 aa13.71□□□□□ -0.21
VAMP4-203ENST00000474047 TIAF1O95411 115 aa13.71□□□□□ -0.21
VAMP4-203ENST00000474047 GABRB3P28472 473 aa13.71□□□□□ -0.21
VAMP4-203ENST00000474047 OAS2P29728 719 aaKnown RBP13.71□□□□□ -0.21
VAMP4-203ENST00000474047 DLSTP36957 453 aa13.71□□□□□ -0.21
VAMP4-203ENST00000474047 HSD17B2P37059 387 aa13.71□□□□□ -0.21
VAMP4-203ENST00000474047 STAT5AP42229 794 aa13.71□□□□□ -0.21
VAMP4-203ENST00000474047 SLC7A5Q01650 507 aa13.71□□□□□ -0.21
VAMP4-203ENST00000474047 FRG1Q14331 258 aaKnown RBP13.71□□□□□ -0.21
VAMP4-203ENST00000474047 RBM20Q5T481 1227 aaKnown RBP13.71□□□□□ -0.21
VAMP4-203ENST00000474047 KIAA1614Q5VZ46 1190 aa13.71□□□□□ -0.21
VAMP4-203ENST00000474047 GALNT7Q86SF2 657 aa13.71□□□□□ -0.21
VAMP4-203ENST00000474047 FAM20CQ8IXL6 584 aa13.71□□□□□ -0.21
VAMP4-203ENST00000474047 GIMAP7Q8NHV1 300 aa13.71□□□□□ -0.21
VAMP4-203ENST00000474047 WDR83Q9BRX9 315 aaKnown RBP13.71□□□□□ -0.21
VAMP4-203ENST00000474047 LRRC1Q9BTT6 524 aa13.71□□□□□ -0.21
VAMP4-203ENST00000474047 MENTQ9BUN1 341 aa13.71□□□□□ -0.21
VAMP4-203ENST00000474047 NSMCE4AQ9NXX6 385 aa13.71□□□□□ -0.21
VAMP4-203ENST00000474047 GRHL1Q9NZI5 618 aa13.71□□□□□ -0.21
VAMP4-203ENST00000474047 TXNDC16Q9P2K2 825 aa13.71□□□□□ -0.21
VAMP4-203ENST00000474047 CORO1CQ9ULV4 474 aaPredicted RBP13.71□□□□□ -0.21
VAMP4-203ENST00000474047 KRT87PA6NCN2 255 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 ZNF891A8MT65 544 aaPredicted RBP13.7□□□□□ -0.22
VAMP4-203ENST00000474047 EIF3FO00303 357 aaPredicted RBP13.7□□□□□ -0.22
VAMP4-203ENST00000474047 OR2B3O76000 313 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 TCN2P20062 427 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 SAT1P21673 171 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 PEBP1P30086 187 aaKnown RBP13.7□□□□□ -0.22
VAMP4-203ENST00000474047 RPA3P35244 121 aaPredicted RBP13.7□□□□□ -0.22
VAMP4-203ENST00000474047 HECTD2Q5U5R9 776 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 FAM45BPQ6NSW5 357 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 UBE2R2Q712K3 238 aaPredicted RBP13.7□□□□□ -0.22
VAMP4-203ENST00000474047 STRA8Q7Z7C7 330 aa13.7□□□□□ -0.22
VAMP4-203ENST00000474047 MYO1HQ8N1T3 1032 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms