RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 ENPP6Q6UWR7 440 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 EFL1Q7Z2Z2 1120 aaKnown RBP13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 SPPL3Q8TCT6 385 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 ABTB1Q969K4 478 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 BIRC7Q96CA5 298 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 RHBDF1Q96CC6 855 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 MPP4Q96JB8 637 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 CGREF1Q99674 301 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 MCMBPQ9BTE3 642 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 GPRC5BQ9NZH0 403 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 C6orf203Q9P0P8 240 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 ACSL6Q9UKU0 697 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 ALPK2Q86TB3 2170 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 OTOL1A6NHN0 477 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 BCKDHAP12694 445 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 GDI1P31150 447 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 MAPK8P45983 427 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 RNF144AP50876 292 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 PLA2G16P53816 162 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 RPS14P62263 151 aaKnown RBP13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 CAMK2GQ13555 558 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 DGCR6Q14129 220 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 SLC30A9Q6PML9 568 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 HTR3DQ70Z44 454 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 CLVS1Q8IUQ0 354 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 GPR150Q8NGU9 434 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 TMIGD2Q96BF3 282 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 RASSF1Q9NS23 344 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 KIF17Q9P2E2 1029 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 CA5BQ9Y2D0 317 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 TBC1D3DA0A087WVF3 549 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 TBC1D3IA0A087WXS9 549 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 TBC1D3EA0A087X179 549 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 TBC1D3KA0A087X1G2 549 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 TBC1D3FA6NER0 549 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 TBC1D3LB9A6J9 549 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 SNAP29O95721 258 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 TBC1D3HP0C7X1 549 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 EPORP19235 508 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 BIRC2Q13490 618 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 ARTNQ5T4W7 220 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 TBC1D3GQ6DHY5 549 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 TBC1D3CQ6IPX1 549 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 PARS2Q7L3T8 475 aaKnown RBP13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 ZC3H7AQ8IWR0 971 aaKnown RBP13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 REM2Q8IYK8 340 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 TBC1D3Q8IZP1 549 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 OVCA2Q8WZ82 227 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 ALG14Q96F25 216 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 HTATIP2Q9BUP3 242 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 RPF2Q9H7B2 306 aaKnown RBP13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 AIG1Q9NVV5 245 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 MAP4K5Q9Y4K4 846 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 ASB3Q9Y575 518 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 HEPACAM2A8MVW5 462 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 POP7O75817 140 aaKnown RBP13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 ANXA4P09525 319 aaPredicted RBP13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 MTHFRP42898 656 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 PRIM2P49643 509 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 SPDYE7PQ495Y7 208 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 SULT1C3Q6IMI6 304 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 NEK5Q6P3R8 708 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 AGTRAPQ6RW13 159 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 CXorf40AQ8TE69 158 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 C1orf109Q9NX04 203 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 CORO1CQ9ULV4 474 aaPredicted RBP13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 OR51B4Q9Y5P0 310 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 GPR45Q9Y5Y3 372 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 CACNA1CQ13936 2221 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 WNT9AO14904 365 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 HSPA1AP0DMV8 641 aaKnown RBP13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 HSPA1BP0DMV9 641 aaKnown RBP13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 MC1RQ01726 317 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 PPIGQ13427 754 aaKnown RBP eCLIP13.38□□□□□ -0.272e-7■□□□□ 10.9
CCDC88A-211ENST00000471947 CHFRQ96EP1 664 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 RMND5BQ96G75 393 aaPredicted RBP13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 TRMT2BQ96GJ1 504 aaKnown RBP13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 SMAD5Q99717 465 aaKnown RBP13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 SLC28A3Q9HAS3 691 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 SNX6Q9UNH7 406 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 A0A1W2PP55 124 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 FADS2P1A8MWK0 482 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 H3BSA7 217 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 SERPINA1P01009 418 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 CCT8P50990 548 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 B4GALNT1Q00973 533 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 KIAA1324Q6UXG2 1013 aaKnown RBP13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 ATG16L2Q8NAA4 619 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 BPIFB6Q8NFQ5 453 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 FGF13Q92913 245 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 COL26A1Q96A83 441 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 TOX2Q96NM4 488 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 MTIF3Q9H2K0 278 aaKnown RBP13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 RHBGQ9H310 441 aa13.38□□□□□ -0.27
CCDC88A-211ENST00000471947 LINC01553A4QN01 128 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 MAGEB17A8MXT2 336 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 KIF1CO43896 1103 aaKnown RBP13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 ERAL1O75616 437 aaKnown RBP13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 CTSLP07711 333 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 IL5RAQ01344 420 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms