RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 OR8J3Q8NGG0 315 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 HM13Q8TCT9 377 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 MUC13Q9H3R2 512 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 ZNF639Q9UID6 485 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 ALPLP05186 524 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 CDK4P11802 303 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 LAG3P18627 525 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 PIGAP37287 484 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 MAPK8P45983 427 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 STT3AP46977 705 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 ADARB1P78563 741 aaKnown RBP18.6■□□□□ 0.57
VIM-203ENST00000469543 PIGFQ07326 219 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 DYNC1I2Q13409 638 aaKnown RBP18.6■□□□□ 0.57
VIM-203ENST00000469543 TEAD2Q15562 447 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 SPATS1Q496A3 300 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 PATL1Q86TB9 770 aaKnown RBP18.6■□□□□ 0.57
VIM-203ENST00000469543 CDC26Q8NHZ8 85 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 FAM162AQ96A26 154 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 NPLQ9BXD5 320 aaPredicted RBP18.6■□□□□ 0.57
VIM-203ENST00000469543 KAT8Q9H7Z6 458 aaKnown RBP18.6■□□□□ 0.57
VIM-203ENST00000469543 RDH14Q9HBH5 336 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 GOLGA4Q13439 2230 aaKnown RBP18.59■□□□□ 0.57
VIM-203ENST00000469543 ELOVL7A1L3X0 281 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 CXCR6O00574 342 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 ATP1B2P14415 290 aaPredicted RBP18.59■□□□□ 0.57
VIM-203ENST00000469543 MSH3P20585 1137 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 RPS14P62263 151 aaKnown RBP18.59■□□□□ 0.57
VIM-203ENST00000469543 RUNDC3AQ59EK9 446 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 ZNF697Q5TEC3 545 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 BORAQ6PGQ7 559 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 ABRAXAS1Q6UWZ7 409 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 ADIPOR2Q86V24 386 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 FRS2Q8WU20 508 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 MCCC1Q96RQ3 725 aaPredicted RBP18.59■□□□□ 0.57
VIM-203ENST00000469543 PAIP1Q9H074 479 aaKnown RBP18.59■□□□□ 0.57
VIM-203ENST00000469543 TRPS1Q9UHF7 1281 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 VPS4AQ9UN37 437 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 G3V2T6 193 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 LEFTY1O75610 366 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 IL6P05231 212 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 TYRP14679 529 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 SDC1P18827 310 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 CD22P20273 847 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 HALP42357 657 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 PREPP48147 710 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 C16orf72Q14CZ0 275 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 ARSIQ5FYB1 569 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 OR4F3Q6IEY1 312 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 LILRA6Q6PI73 481 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 PNPT1Q8TCS8 783 aaKnown RBP18.59■□□□□ 0.57
VIM-203ENST00000469543 OSCP1Q8WVF1 389 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 ELMO1Q92556 727 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 ZSWIM3Q96MP5 696 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 SLC12A9Q9BXP2 914 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 ZBP1Q9H171 429 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 POLR1BQ9H9Y6 1135 aa18.59■□□□□ 0.57
VIM-203ENST00000469543 DYTNA2CJ06 578 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 POP4O95707 220 aaKnown RBP18.58■□□□□ 0.57
VIM-203ENST00000469543 KRT6AP02538 564 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 KRT6BP04259 564 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 HIST1H2AGP0C0S8 130 aaPredicted RBP18.58■□□□□ 0.57
VIM-203ENST00000469543 OR56A5P0C7T3 313 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 IL7RP16871 459 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 HIST1H2ADP20671 130 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 EEF1B2P24534 225 aaKnown RBP18.58■□□□□ 0.57
VIM-203ENST00000469543 KRT6CP48668 564 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 PON2Q15165 354 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 C11orf91Q3C1V1 193 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 LY6G5CQ5SRR4 150 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 GPR107Q5VW38 600 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 LYPLAL1Q5VWZ2 237 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 SPESP1Q6UW49 350 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 OR7A2PQ8NGA2 310 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 HIST1H2AHQ96KK5 128 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 HIST1H2AJQ99878 128 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 H2AFJQ9BTM1 129 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 AASSQ9UDR5 926 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 WNT6Q9Y6F9 365 aa18.58■□□□□ 0.57
VIM-203ENST00000469543 NOTCH4Q99466 2003 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 hCG_2014768A0A024R1R8 64 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 A0A087WXM4 84 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 TRIM43BA6NCK2 446 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 FADS2P1A8MWK0 482 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 SGTAO43765 313 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 GMNNO75496 209 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 BMP10O95393 424 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 SERPINA1P01009 418 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 ALBP02768 609 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 CDK9P50750 372 aaKnown RBP18.58■□□□□ 0.56
VIM-203ENST00000469543 METAP1P53582 386 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 TUBA4AP68366 448 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 MESP2Q0VG99 397 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 CHIT1Q13231 466 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 ADRM1Q16186 407 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 KCTD21Q4G0X4 260 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 KCTD8Q6ZWB6 473 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 GPR141Q7Z602 305 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 UBTD2Q8WUN7 234 aa18.58■□□□□ 0.56
VIM-203ENST00000469543 TRIM43Q96BQ3 446 aaPredicted RBP18.58■□□□□ 0.56
VIM-203ENST00000469543 ISOC1Q96CN7 298 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms