RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 B3GNTL1Q67FW5 361 aaPredicted RBP5.08□□□□□ -1.6
PTPN4-209ENST00000469511 RPUSD3Q6P087 351 aaKnown RBP5.08□□□□□ -1.6
PTPN4-209ENST00000469511 DNAJC24Q6P3W2 148 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 CYB5D1Q6P9G0 228 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 XKRXQ6PP77 449 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 BEND4Q6ZU67 534 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 TMC3Q7Z5M5 1100 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 POLNQ7Z5Q5 900 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 TRIM73Q86UV7 250 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 CPNE8Q86YQ8 564 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 TRAPPC5Q8IUR0 188 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 MCOLN2Q8IZK6 566 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 CELF2-AS1Q8N7Q2 184 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 LMNTD1Q8N9Z9 388 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 OR8K5Q8NH50 307 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 CHTF18Q8WVB6 975 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 TM9SF4Q92544 642 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 PTERQ96BW5 349 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 THOC3Q96J01 351 aaKnown RBP5.08□□□□□ -1.6
PTPN4-209ENST00000469511 DHRS1Q96LJ7 313 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 TIGD1Q96MW7 591 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 AGAP4Q96P64 663 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 CD180Q99467 661 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 TREX2Q9BQ50 279 aaPredicted RBP5.08□□□□□ -1.6
PTPN4-209ENST00000469511 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.08□□□□□ -1.6
PTPN4-209ENST00000469511 XKR8Q9H6D3 395 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 UGT1A7Q9HAW7 530 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 UGT1A10Q9HAW8 530 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 UGT1A8Q9HAW9 530 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 PCDH9Q9HC56 1237 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 C1GALT1Q9NS00 363 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 PKD2L2Q9NZM6 624 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 TNFRSF10DQ9UBN6 386 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 SUCOQ9UBS9 1254 aaKnown RBP5.08□□□□□ -1.6
PTPN4-209ENST00000469511 SEC14L3Q9UDX4 400 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 RWDD2AQ9UIY3 292 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 POMT2Q9UKY4 750 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 TTLL3Q9Y4R7 772 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 SPO11Q9Y5K1 396 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 HS3ST3B1Q9Y662 390 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 STAB1Q9NY15 2570 aa5.08□□□□□ -1.6
PTPN4-209ENST00000469511 PHF3Q92576 2039 aaKnown RBP5.07□□□□□ -1.6
PTPN4-209ENST00000469511 HRNRQ86YZ3 2850 aaPredicted RBP5.07□□□□□ -1.6
PTPN4-209ENST00000469511 VPS13CQ709C8 3753 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 GSAPA4D1B5 854 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 TMCO5BA8MYB1 307 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 E7EQ34 232 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 ADAM10O14672 748 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 BUD23O43709 281 aaKnown RBP5.07□□□□□ -1.6
PTPN4-209ENST00000469511 MFSD11O43934 449 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 SLC19A2O60779 497 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 FAM155BO75949 473 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 MED26O95402 600 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 POLBP06746 335 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 HSP90AA1P07900 732 aaKnown RBP5.07□□□□□ -1.6
PTPN4-209ENST00000469511 AGXTP21549 392 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 HTR7P34969 479 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 PPP1R2P41236 205 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 CD86P42081 329 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 HALP42357 657 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 GATA4P43694 442 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 NSFP46459 744 aaKnown RBP5.07□□□□□ -1.6
PTPN4-209ENST00000469511 HCAR3P49019 387 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 TNFSF10P50591 281 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 POLR2FP61218 127 aaKnown RBP5.07□□□□□ -1.6
PTPN4-209ENST00000469511 HSF1Q00613 529 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 SLC10A2Q12908 348 aaPredicted RBP5.07□□□□□ -1.6
PTPN4-209ENST00000469511 MFAP5Q13361 173 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 XRCC4Q13426 336 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 MAMLD1Q13495 774 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 PTPRCAPQ14761 206 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 CEBPEQ15744 281 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 BBS9Q3SYG4 887 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 NKAIN1Q4KMZ8 207 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 ATP13A4Q4VNC1 1196 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 RALGPS1Q5JS13 557 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 FAAH2Q6GMR7 532 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 LETMD1Q6P1Q0 360 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 DCUN1D2Q6PH85 259 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 TMEM220Q6QAJ8 160 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 PAOXQ6QHF9 649 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 ISLR2Q6UXK2 745 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 RPTNQ6XPR3 784 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 COX15Q7KZN9 410 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 DAAM2Q86T65 1068 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 OOSP2Q86WS3 158 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 ZNF677Q86XU0 584 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 RBM12BQ8IXT5 1001 aaKnown RBP5.07□□□□□ -1.6
PTPN4-209ENST00000469511 ATPAF2Q8N5M1 289 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 TRAM1L1Q8N609 369 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 METTL27Q8N6F8 245 aaPredicted RBP5.07□□□□□ -1.6
PTPN4-209ENST00000469511 ZNF655Q8N720 491 aaPredicted RBP5.07□□□□□ -1.6
PTPN4-209ENST00000469511 CNTD1Q8N815 330 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 DNAJB8Q8NHS0 232 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 MAML1Q92585 1016 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 C8orf44Q96CB5 159 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 RMDN2Q96LZ7 410 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 C12orf66Q96MD2 445 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 IP6K3Q96PC2 410 aa5.07□□□□□ -1.6
PTPN4-209ENST00000469511 CSPG4P5Q96PW8 444 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms