RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 RTP5Q14D33 572 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 ACOX1Q15067 660 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 SEPT7Q16181 437 aaKnown RBP5.38□□□□□ -1.55
VPS41-211ENST00000466017 PDK4Q16654 411 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 FAM83EQ2M2I3 478 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 WSCD2Q2TBF2 565 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 CR1LQ2VPA4 569 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 TTLL9Q3SXZ7 439 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 CDKL4Q5MAI5 379 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 CTSL3PQ5NE16 218 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 RBM20Q5T481 1227 aaKnown RBP5.38□□□□□ -1.55
VPS41-211ENST00000466017 GPRC6AQ5T6X5 926 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 METTL2BQ6P1Q9 378 aaKnown RBP5.38□□□□□ -1.55
VPS41-211ENST00000466017 TTC23LQ6PF05 361 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 LVRNQ6Q4G3 990 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 TMEM207Q6UWW9 146 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 CYHR1Q6ZMK1 362 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 RFLNAQ6ZTI6 216 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 RAPH1Q70E73 1250 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 TAS2R42Q7RTR8 314 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 MILR1Q7Z6M3 343 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 TBC1D1Q86TI0 1168 aaPredicted RBP5.38□□□□□ -1.55
VPS41-211ENST00000466017 ISCA2Q86U28 154 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 LDB1Q86U70 411 aaPredicted RBP5.38□□□□□ -1.55
VPS41-211ENST00000466017 PHYKPLQ8IUZ5 450 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 RASGRP3Q8IV61 690 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 SLC41A1Q8IVJ1 513 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 CEP97Q8IW35 865 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 CENPLQ8N0S6 344 aaPredicted RBP5.38□□□□□ -1.55
VPS41-211ENST00000466017 C4orf33Q8N1A6 199 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 GPATCH11Q8N954 259 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 ACVR1CQ8NER5 493 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 CADM4Q8NFZ8 388 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 PJA1Q8NG27 643 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 EDAQ92838 391 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 SCAMP4Q969E2 229 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 KIAA1191Q96A73 305 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 NUS1Q96E22 293 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 CCDC126Q96EE4 140 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 DCUN1D1Q96GG9 259 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 HIC2Q96JB3 615 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 ELMO2Q96JJ3 720 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 MAGEB18Q96M61 343 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 TSNARE1Q96NA8 513 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 KLF6Q99612 283 aaPredicted RBP5.38□□□□□ -1.55
VPS41-211ENST00000466017 OLFM1Q99784 485 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 MRPL57Q9BQC6 102 aaKnown RBP5.38□□□□□ -1.55
VPS41-211ENST00000466017 RIOK2Q9BVS4 552 aaKnown RBP5.38□□□□□ -1.55
VPS41-211ENST00000466017 TSSK1BQ9BXA7 367 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 SPATA16Q9BXB7 569 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 CAPS2Q9BXY5 557 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 CLPBQ9H078 707 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 IQCGQ9H095 443 aaKnown RBP5.38□□□□□ -1.55
VPS41-211ENST00000466017 BTBD1Q9H0C5 482 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 MRPL46Q9H2W6 279 aaKnown RBP5.38□□□□□ -1.55
VPS41-211ENST00000466017 SPATS2LQ9NUQ6 558 aaKnown RBP5.38□□□□□ -1.55
VPS41-211ENST00000466017 WSB2Q9NYS7 404 aaPredicted RBP5.38□□□□□ -1.55
VPS41-211ENST00000466017 TMEM216Q9P0N5 145 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 DLGAP2Q9P1A6 1054 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 SIRPGQ9P1W8 387 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 SLC17A6Q9P2U8 582 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 CA14Q9ULX7 337 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 TMCO1Q9UM00 188 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 NDRG2Q9UN36 371 aaKnown RBP5.38□□□□□ -1.55
VPS41-211ENST00000466017 RUVBL2Q9Y230 463 aaKnown RBP5.38□□□□□ -1.55
VPS41-211ENST00000466017 LAMA3Q16787 3333 aa5.38□□□□□ -1.55
VPS41-211ENST00000466017 PLXNA2O75051 1894 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 LRRK1Q38SD2 2015 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 TBC1D3DA0A087WVF3 549 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 TBC1D3IA0A087WXS9 549 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 TBC1D3EA0A087X179 549 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 TBC1D3KA0A087X1G2 549 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 TCRBV21S2A2A0A5A6 115 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 UBA6A0AVT1 1052 aaPredicted RBP5.37□□□□□ -1.55
VPS41-211ENST00000466017 SLC5A10A0PJK1 596 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 GMNCA6NCL1 334 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 TBC1D3FA6NER0 549 aaPredicted RBP5.37□□□□□ -1.55
VPS41-211ENST00000466017 IGLON5A6NGN9 336 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 TBC1D3LB9A6J9 549 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 GOLGA8RI6L899 631 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 CHUKO15111 745 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 POLR3GO15318 223 aaPredicted RBP5.37□□□□□ -1.55
VPS41-211ENST00000466017 SLC16A5O15375 505 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 RRP9O43818 475 aaKnown RBP5.37□□□□□ -1.55
VPS41-211ENST00000466017 KLK8O60259 260 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 OR1I1O60431 355 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 SPAG7O75391 227 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 RNASEH2AO75792 299 aaKnown RBP5.37□□□□□ -1.55
VPS41-211ENST00000466017 CDK14O94921 469 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 SLCO2B1O94956 709 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 PCDH8O95206 1070 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 SLC25A14O95258 325 aaPredicted RBP5.37□□□□□ -1.55
VPS41-211ENST00000466017 TGDSO95455 350 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 APBB3O95704 486 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 TSPAN12O95859 305 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 PAK4O96013 591 aaPredicted RBP5.37□□□□□ -1.55
VPS41-211ENST00000466017 FTH1P02794 183 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 SBK3P0C264 359 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 TBC1D3HP0C7X1 549 aa5.37□□□□□ -1.55
VPS41-211ENST00000466017 PRSS56P0CW18 603 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms