RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 AMBNQ9NP70 447 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 TNFRSF12AQ9NP84 129 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 TLR9Q9NR96 1032 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 SMOXQ9NWM0 555 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 GALNT8Q9NY28 637 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 DNAJB9Q9UBS3 223 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 DAPK2Q9UIK4 370 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 RIMS3Q9UJD0 308 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 IKZF3Q9UKT9 509 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 COLQQ9Y215 455 aaPredicted RBP11.36□□□□□ -0.59
NPHP4-204ENST00000460696 NUMA1Q14980 2115 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 H0Y858 1186 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 QSOX1O00391 747 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 SGTAO43765 313 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 IGLV3-25P01717 112 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 OCM2P0CE71 109 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 OCMP0CE72 109 aaPredicted RBP11.36□□□□□ -0.59
NPHP4-204ENST00000460696 RPL10P27635 214 aaKnown RBP11.36□□□□□ -0.59
NPHP4-204ENST00000460696 ALDH4A1P30038 563 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 C2orf80Q0P641 193 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 TP53BP2Q13625 1128 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 PHKG1Q16816 387 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 PDCD4Q53EL6 469 aaKnown RBP11.36□□□□□ -0.59
NPHP4-204ENST00000460696 FRG2Q64ET8 278 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 CAPN13Q6MZZ7 669 aaPredicted RBP11.36□□□□□ -0.59
NPHP4-204ENST00000460696 RSPO2Q6UXX9 243 aaPredicted RBP11.36□□□□□ -0.59
NPHP4-204ENST00000460696 GDPD4Q6W3E5 623 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 HIPK1Q86Z02 1210 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 ADGRG2Q8IZP9 1017 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 SVOPQ8N4V2 548 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 HM13Q8TCT9 377 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 PLEKHA8Q96JA3 519 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 FRG2BQ96QU4 278 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 C8orf4Q9NR00 106 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.36□□□□□ -0.59
NPHP4-204ENST00000460696 PDE10AQ9Y233 779 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 WNT6Q9Y6F9 365 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 MAGEB17A8MXT2 336 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 APOA1P02647 267 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 IL7RP16871 459 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 GRK3P35626 688 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 ZNF140P52738 457 aaPredicted RBP11.36□□□□□ -0.59
NPHP4-204ENST00000460696 SPIBQ01892 262 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 RFX4Q33E94 735 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 C22orf39Q6P5X5 142 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 PRR23CQ6ZRP0 262 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 ZNF605Q86T29 641 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 GPR150Q8NGU9 434 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 GIPC3Q8TF64 312 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 PPCDCQ96CD2 204 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 CASD1Q96PB1 797 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 CD320Q9NPF0 282 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 IL26Q9NPH9 171 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 FARSBQ9NSD9 589 aaKnown RBP11.36□□□□□ -0.59
NPHP4-204ENST00000460696 VPS4AQ9UN37 437 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 CLIC1O00299 241 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 AXIN1O15169 862 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 TEX28O15482 410 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 GBAP04062 536 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 BPIP17213 487 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 OXTRP30559 389 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 PREPP48147 710 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 SGSHP51688 502 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 CLCN4P51793 760 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 RPL26P61254 145 aaKnown RBP11.35□□□□□ -0.59
NPHP4-204ENST00000460696 UBXN2BQ14CS0 331 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 ATP13A5Q4VNC0 1218 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 ZNF648Q5T619 568 aaPredicted RBP11.35□□□□□ -0.59
NPHP4-204ENST00000460696 PDE12Q6L8Q7 609 aaKnown RBP11.35□□□□□ -0.59
NPHP4-204ENST00000460696 ANKRD26P1Q6NSI1 321 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 UGT2A3Q6UWM9 527 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 BHLHA9Q7RTU4 235 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 GRASPQ7Z6J2 395 aaPredicted RBP11.35□□□□□ -0.59
NPHP4-204ENST00000460696 PACRGLQ8N7B6 248 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 CXorf40AQ8TE69 158 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 MYEOVQ96EZ4 313 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 MUS81Q96NY9 551 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 NLNQ9BYT8 704 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 ZDHHC7Q9NXF8 308 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 UBAP1Q9NZ09 502 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 TMEM181Q9P2C4 612 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 CLCA2Q9UQC9 943 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 MAP4K5Q9Y4K4 846 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 ERN1O75460 977 aaKnown RBP11.35□□□□□ -0.59
NPHP4-204ENST00000460696 FADS2O95864 444 aaKnown RBP11.35□□□□□ -0.59
NPHP4-204ENST00000460696 SERPINB1P30740 379 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 CD70P32970 193 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 CREMQ03060 361 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 RUNX1T1Q06455 604 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 TOP3AQ13472 1001 aaPredicted RBP11.35□□□□□ -0.59
NPHP4-204ENST00000460696 NR1D2Q14995 579 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 PPP4R4Q6NUP7 873 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 SORCS1Q8WY21 1168 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 TMIGD2Q96BF3 282 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 NODALQ96S42 347 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 TESMINQ9Y4I5 508 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 PRSS51A0A1B0GVH4 220 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 LEFTY2O00292 366 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 EBLN1P0CF75 366 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 ATP1B2P14415 290 aaPredicted RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms