RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 LSM3P62310 102 aaKnown RBP8.16□□□□□ -1.1
CD44-208ENST00000428726 SNRPD1P62314 119 aaKnown RBP8.16□□□□□ -1.1
CD44-208ENST00000428726 CHIT1Q13231 466 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 NKG7Q16617 165 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 CATSPEREQ5SY80 951 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 TMEM220Q6QAJ8 160 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 ZNF783Q6ZMS7 281 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 SNX29P2Q8IUI4 249 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 TCEAL8Q8IYN2 117 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 OR2T34Q8NGX1 318 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 OR2T3Q8NH03 318 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 MIPOL1Q8TD10 442 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 IRF7Q92985 503 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 UBE2FQ969M7 185 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 ROPN1LQ96C74 230 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 ARSGQ96EG1 525 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 RPP25Q9BUL9 199 aaKnown RBP8.16□□□□□ -1.1
CD44-208ENST00000428726 TMEM106CQ9BVX2 250 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 CHID1Q9BWS9 393 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 P2RY12Q9H244 342 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 AMBNQ9NP70 447 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 SDR39U1Q9NRG7 319 aaPredicted RBP8.16□□□□□ -1.1
CD44-208ENST00000428726 SH3BP4Q9P0V3 963 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 ACSL6Q9UKU0 697 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 MYO10Q9HD67 2058 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 E7EQ34 232 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 STX16O14662 325 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 MITFO75030 526 aaPredicted RBP8.16□□□□□ -1.1
CD44-208ENST00000428726 VPS4BO75351 444 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 ETHE1O95571 254 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 IL7RP16871 459 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 POLR2EP19388 210 aaKnown RBP8.16□□□□□ -1.1
CD44-208ENST00000428726 SLC19A1P41440 591 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 CLCN4P51793 760 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 MAPKAPK3Q16644 382 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 PABPC1LQ4VXU2 614 aaKnown RBP8.16□□□□□ -1.1
CD44-208ENST00000428726 MPPE1Q53F39 396 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 XKR6Q5GH73 641 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 AARS2Q5JTZ9 985 aaKnown RBP8.16□□□□□ -1.1
CD44-208ENST00000428726 C9orf50Q5SZB4 431 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 TXNDC11Q6PKC3 985 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 SPESP1Q6UW49 350 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 RD3Q7Z3Z2 195 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 ITIH5Q86UX2 942 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 GANCQ8TET4 914 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 TMEM125Q96AQ2 219 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 RHBDF1Q96CC6 855 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 TPD52L3Q96J77 140 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 OSBPL6Q9BZF3 934 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 ACPTQ9BZG2 426 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 CCDC90BQ9GZT6 254 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 OSGEPL1Q9H4B0 414 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 EPS8L2Q9H6S3 715 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 FZD3Q9NPG1 666 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 TMCO1Q9UM00 188 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 BTBD3Q9Y2F9 522 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 CCDC88CQ9P219 2028 aa8.16□□□□□ -1.1
CD44-208ENST00000428726 TBC1D3BA6NDS4 549 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 PABPN1LA6NDY0 278 aaKnown RBP8.15□□□□□ -1.1
CD44-208ENST00000428726 J3QRK9 145 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 M0R129 80 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 AREL1O15033 823 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 LSM1O15116 133 aaKnown RBP8.15□□□□□ -1.1
CD44-208ENST00000428726 DENRO43583 198 aaKnown RBP8.15□□□□□ -1.1
CD44-208ENST00000428726 E2F6O75461 281 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 TRMUO75648 421 aaKnown RBP8.15□□□□□ -1.1
CD44-208ENST00000428726 PRKD3O94806 890 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 TNFAIP8O95379 198 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 SLC16A8O95907 504 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 FGBP02675 491 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 CXCL10P02778 98 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 ADH1AP07327 375 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 HIST1H2AGP0C0S8 130 aaPredicted RBP8.15□□□□□ -1.1
CD44-208ENST00000428726 HIST1H2ADP20671 130 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 HRH2P25021 359 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 ZFP36L2P47974 494 aaKnown RBP8.15□□□□□ -1.1
CD44-208ENST00000428726 PCBP2Q15366 365 aaKnown RBP eCLIP8.15□□□□□ -1.1
CD44-208ENST00000428726 HKDC1Q2TB90 917 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 SYTL3Q4VX76 610 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 CARD16Q5EG05 197 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 GPR107Q5VW38 600 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 TPGS2Q68CL5 300 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 C8orf82Q6P1X6 216 aaPredicted RBP8.15□□□□□ -1.1
CD44-208ENST00000428726 KLHL17Q6TDP4 642 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 Q6ZNB5 142 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 VTCN1Q7Z7D3 282 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 TMPRSS11BQ86T26 416 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 ADIPOR2Q86V24 386 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 RNF168Q8IYW5 571 aaPredicted RBP8.15□□□□□ -1.1
CD44-208ENST00000428726 OR52J3Q8NH60 311 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 FRS2Q8WU20 508 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 FBXL8Q96CD0 374 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 TRMT2BQ96GJ1 504 aaKnown RBP8.15□□□□□ -1.1
CD44-208ENST00000428726 HIST1H2AHQ96KK5 128 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 HIST1H2AJQ99878 128 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 H2AFJQ9BTM1 129 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 OR51B5Q9H339 312 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 FAM83DQ9H4H8 585 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 AIG1Q9NVV5 245 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 CD300AQ9UGN4 299 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms