RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 DPH2Q9BQC3 489 aaPredicted RBP11.13□□□□□ -0.63
USP4-204ENST00000416417 MESP1Q9BRJ9 268 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 MENTQ9BUN1 341 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 AP1M1Q9BXS5 423 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 CHRAC1Q9NRG0 131 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 ASF1BQ9NVP2 202 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 P4HTMQ9NXG6 502 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 EURLQ9NYK6 297 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 STOX2Q9P2F5 926 aaPredicted RBP11.13□□□□□ -0.63
USP4-204ENST00000416417 G3BP2Q9UN86 482 aaKnown RBP11.13□□□□□ -0.63
USP4-204ENST00000416417 PLCL2Q9UPR0 1127 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 TCAF1Q9Y4C2 921 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 CSAG2Q9Y5P2 127 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 NFS1Q9Y697 457 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 AP1M2Q9Y6Q5 423 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 USP9YO00507 2555 aaPredicted RBP11.13□□□□□ -0.63
USP4-204ENST00000416417 FER1L5A0AVI2 2057 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 QSOX1O00391 747 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 PEX12O00623 359 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 SUN1O94901 812 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 GAS8O95995 478 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 APRTP07741 180 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 ADRA1DP25100 572 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 COL8A1P27658 744 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 BDKRB1P46663 353 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 PRAMEP78395 509 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 KIR2DS3Q14952 304 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 SEL1L2Q5TEA6 688 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 VWA5B1Q5TIE3 1220 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 LYPLAL1Q5VWZ2 237 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 FCRL6Q6DN72 434 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 MRPL14Q6P1L8 145 aaKnown RBP11.12□□□□□ -0.63
USP4-204ENST00000416417 CES3Q6UWW8 571 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 GALNT16Q8N428 558 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 OR2Y1Q8NGV0 311 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 SSC4DQ8WTU2 575 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 PNPLA2Q96AD5 504 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 NDC1Q9BTX1 674 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 DHRS4Q9BTZ2 278 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 ZNF552Q9H707 407 aaPredicted RBP11.12□□□□□ -0.63
USP4-204ENST00000416417 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.12□□□□□ -0.63
USP4-204ENST00000416417 PCDHGB7Q9Y5F8 929 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 SHANK1Q9Y566 2161 aa11.12□□□□□ -0.63
USP4-204ENST00000416417 PIKFYVEQ9Y2I7 2098 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 GPC4O75487 556 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 ZNF189O75820 626 aaPredicted RBP11.11□□□□□ -0.63
USP4-204ENST00000416417 MED26O95402 600 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 CD9P21926 228 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 AOAHP28039 575 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 RPL22P35268 128 aaKnown RBP11.11□□□□□ -0.63
USP4-204ENST00000416417 FDFT1P37268 417 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 OR1D4P47884 311 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 RAB28P51157 221 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 YBX1P67809 324 aaKnown RBP11.11□□□□□ -0.63
USP4-204ENST00000416417 ACVR1Q04771 509 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 DNAJC21Q5F1R6 531 aaKnown RBP11.11□□□□□ -0.63
USP4-204ENST00000416417 TLDC1Q6P9B6 456 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 FIGLAQ6QHK4 219 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 COX15Q7KZN9 410 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 SLC13A5Q86YT5 568 aaPredicted RBP11.11□□□□□ -0.63
USP4-204ENST00000416417 CLEC1AQ8NC01 280 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 PROKR1Q8TCW9 393 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 FAM136AQ96C01 138 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 FER1L6-AS2Q96M78 137 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 RANBP9Q96S59 729 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 SOX17Q9H6I2 414 aaPredicted RBP11.11□□□□□ -0.63
USP4-204ENST00000416417 CATSPERZQ9NTU4 200 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 GUCA1BQ9UMX6 200 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 NTNG1Q9Y2I2 539 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 MAU2Q9Y6X3 613 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 PRRC2CQ9Y520 2896 aaKnown RBP11.11□□□□□ -0.63
USP4-204ENST00000416417 CCDC88CQ9P219 2028 aa11.11□□□□□ -0.63
USP4-204ENST00000416417 GOLGA8KD6RF30 607 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 GOLGA8TH3BQL2 631 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 F7P08709 466 aaPredicted RBP11.1□□□□□ -0.63
USP4-204ENST00000416417 NMBRP28336 390 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 STIP1P31948 543 aaKnown RBP11.1□□□□□ -0.63
USP4-204ENST00000416417 GCGRP47871 477 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 GLRBP48167 497 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 MYBPC3Q14896 1274 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 SF1Q15637 639 aaKnown RBP11.1□□□□□ -0.63
USP4-204ENST00000416417 HIF1AQ16665 826 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 CYP2A13Q16696 494 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 PTRHD1Q6GMV3 140 aaKnown RBP11.1□□□□□ -0.63
USP4-204ENST00000416417 LURAP1LQ8IV03 231 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 PRSS58Q8IYP2 241 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 PPHLN1Q8NEY8 458 aaKnown RBP11.1□□□□□ -0.63
USP4-204ENST00000416417 SKA2Q8WVK7 121 aaPredicted RBP11.1□□□□□ -0.63
USP4-204ENST00000416417 PTERQ96BW5 349 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 TTC1Q99614 292 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 MIPEPQ99797 713 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 CARD6Q9BX69 1037 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 ILKAPQ9H0C8 392 aaPredicted RBP11.1□□□□□ -0.63
USP4-204ENST00000416417 SLC6A20Q9NP91 592 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 CTSFQ9UBX1 484 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 CDC23Q9UJX2 597 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 FBXL4Q9UKA2 621 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 SLC39A10Q9ULF5 831 aa11.1□□□□□ -0.63
USP4-204ENST00000416417 TTC7AQ9ULT0 858 aaPredicted RBP11.1□□□□□ -0.63
USP4-204ENST00000416417 SRPK3Q9UPE1 567 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms