RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 CAMLGP49069 296 aa13.08□□□□□ -0.31
CCDC88A-204ENST00000413716 RAB31Q13636 194 aa13.08□□□□□ -0.31
CCDC88A-204ENST00000413716 CCDC88AQ3V6T2 1871 aa13.08□□□□□ -0.31
CCDC88A-204ENST00000413716 CLEC12AQ5QGZ9 265 aa13.08□□□□□ -0.31
CCDC88A-204ENST00000413716 GPR153Q6NV75 609 aa13.08□□□□□ -0.31
CCDC88A-204ENST00000413716 APOLD1Q96LR9 279 aa13.08□□□□□ -0.31
CCDC88A-204ENST00000413716 SERINC1Q9NRX5 453 aa13.08□□□□□ -0.31
CCDC88A-204ENST00000413716 OSER1Q9NX31 292 aa13.08□□□□□ -0.31
CCDC88A-204ENST00000413716 ADCY10Q96PN6 1610 aa13.08□□□□□ -0.31
CCDC88A-204ENST00000413716 KNL1Q8NG31 2342 aa13.08□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.08□□□□□ -0.323e-6■■□□□ 11.4
CCDC88A-204ENST00000413716 NKAPLQ5M9Q1 402 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 SLC8B1Q6J4K2 584 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 FAM122CQ6P4D5 195 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 Q8N402 240 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 SMPDL3BQ92485 455 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 WNT8BQ93098 351 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 TTYH2Q9BSA4 534 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 POLR2J3Q9H1A7 115 aaKnown RBP13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 KHNYNO15037 678 aaKnown RBP13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 SLC37A4O43826 429 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 HMGN1P05114 100 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 LCKP06239 509 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 GCNT1Q02742 428 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 ENPP2Q13822 863 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 MFSD13AQ14CX5 517 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 PRKD1Q15139 912 aaPredicted RBP13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 ANGEL2Q5VTE6 544 aaKnown RBP13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 USP29Q9HBJ7 922 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 SNTG2Q9NY99 539 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 ASXL3Q9C0F0 2248 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 C12orf71A8MTZ7 269 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 ZNF254O75437 659 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 BDNFP23560 247 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 TAS2R43P59537 309 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 KIAA1161Q6NSJ0 714 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 ZNF584Q8IVC4 421 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 CASTOR1Q8WTX7 329 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 C22orf15Q8WYQ4 148 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 IGFLR1Q9H665 355 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 LAMP5Q9UJQ1 280 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 SIGLEC16A6NMB1 481 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 TRUB2O95900 331 aaKnown RBP13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 AFF3P51826 1226 aaKnown RBP13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 DEFA6Q01524 100 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 DAGLBQ8NCG7 672 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 TSSK3Q96PN8 268 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 HEBP2Q9Y5Z4 205 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 NKRFO15226 690 aaKnown RBP eCLIP13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 SMSP52788 366 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 CCDC71Q8IV32 467 aaPredicted RBP13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 PIAS4Q8N2W9 510 aaPredicted RBP13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 LMLNQ96KR4 655 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 TM9SF2Q99805 663 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 TUBA1CQ9BQE3 449 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 C12orf65Q9H3J6 166 aaKnown RBP13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 HACL1Q9UJ83 578 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 HCN2Q9UL51 889 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 PREX2Q70Z35 1606 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 BRINP1O60477 761 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 ADRA2BP18089 450 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 CD72P21854 359 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 IFI44LQ53G44 452 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 SMIM15Q7Z3B0 74 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 EGFL6Q8IUX8 553 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 SLC6A7Q99884 636 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 PPP4R1LQ9P1A2 415 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 ZNF282Q9UDV7 671 aaPredicted RBP13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 SPAG17Q6Q759 2223 aa13.08□□□□□ -0.32
CCDC88A-204ENST00000413716 SLC19A2O60779 497 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 CYP11A1P05108 521 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 PEX2P28328 305 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 LRRC66Q68CR7 880 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 CHRAC1Q9NRG0 131 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 MRPL42Q9Y6G3 142 aaKnown RBP13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 ANXA4P09525 319 aaPredicted RBP13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 VEGFCP49767 419 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 FADDQ13158 208 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 GET4Q7L5D6 327 aaPredicted RBP13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 SP8Q8IXZ3 490 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 TVP23BQ9NYZ1 205 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 NYAP2Q9P242 653 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 ARL6IP5O75915 188 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 ZSCAN5DPP0CG00 497 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 MLC1Q15049 377 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 GOLM1Q8NBJ4 401 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 TMEM41AQ96HV5 264 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 ACTR6Q9GZN1 396 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 CXCR6O00574 342 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 SCGB1D1O95968 90 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 RAP2AP10114 183 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 CXCR1P25024 350 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 CRB2Q5IJ48 1285 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 BAIAP2L2Q6UXY1 529 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 ZBTB2Q8N680 514 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 GAD1Q99259 594 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 SEMA3CQ99985 751 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 PLLPQ9Y342 182 aa13.07□□□□□ -0.32
CCDC88A-204ENST00000413716 FAM234BA2RU67 622 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms