RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 UBASH3AP57075 661 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 ARHGAP8P85298 464 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 TLE3Q04726 772 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 SULT2A1Q06520 285 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 ASIC2Q16515 512 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 NAA35Q5VZE5 725 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 OLFML1Q6UWY5 402 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 DCDC5Q6ZRR9 648 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 ARCQ7LC44 396 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 ASCL5Q7RTU5 278 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 RABEPKQ7Z6M1 372 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 TAC4Q86UU9 113 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 LGI2Q8N0V4 545 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 CARNMT1Q8N4J0 409 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 PTGR2Q8N8N7 351 aaPredicted RBP6.36□□□□□ -1.39
USP40-202ENST00000409945 KIAA1524Q8TCG1 905 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 WBP2Q969T9 261 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 RPRD1AQ96P16 312 aaPredicted RBP6.36□□□□□ -1.39
USP40-202ENST00000409945 STN1Q9H668 368 aaKnown RBP6.36□□□□□ -1.39
USP40-202ENST00000409945 SYNPO2LQ9H987 977 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 CPNE5Q9HCH3 593 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 ELOVL2Q9NXB9 296 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 ADAM22Q9P0K1 906 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 SH3BP4Q9P0V3 963 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 SUN2Q9UH99 717 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 GGA2Q9UJY4 613 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 BAG5Q9UL15 447 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 BZW2Q9Y6E2 419 aaKnown RBP6.36□□□□□ -1.39
USP40-202ENST00000409945 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.35□□□□□ -1.39
USP40-202ENST00000409945 A0A1B0GVM2 712 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 RFPL3SP0C7P2 107 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 TDGF1P13385 188 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 TACR2P21452 398 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 CALRP27797 417 aaKnown RBP6.35□□□□□ -1.39
USP40-202ENST00000409945 HOXD9P28356 352 aaPredicted RBP6.35□□□□□ -1.39
USP40-202ENST00000409945 DUSP1P28562 367 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 GALNT2Q10471 571 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 ZNF177Q13360 481 aaPredicted RBP6.35□□□□□ -1.39
USP40-202ENST00000409945 SLC25A52Q3SY17 297 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 PTPN20Q4JDL3 420 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 MS4A13Q5J8X5 152 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 SPDYCQ5MJ68 293 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 SH2D4BQ5SQS7 431 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 SFMBT2Q5VUG0 894 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 SYPL2Q5VXT5 272 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 CHST9Q7L1S5 443 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 LPCAT2Q7L5N7 544 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 LAS2Q8IYD9 372 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 WDTC1Q8N5D0 677 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 FIBINQ8TAL6 211 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 C2CD4CQ8TF44 421 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 RITA1Q96K30 269 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 ZNF830Q96NB3 372 aaPredicted RBP6.35□□□□□ -1.39
USP40-202ENST00000409945 AGPAT1Q99943 283 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 ADGRE3Q9BY15 652 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 ABCB8Q9NUT2 735 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 DONSONQ9NYP3 566 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 CYTH4Q9UIA0 394 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 PCDHGA5Q9Y5G8 931 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.35□□□□□ -1.39
USP40-202ENST00000409945 MYOFQ9NZM1 2061 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 FANCMQ8IYD8 2048 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 PTPRZ1P23471 2315 aaPredicted RBP6.35□□□□□ -1.39
USP40-202ENST00000409945 SGK1O00141 431 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 CLDN11O75508 207 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 LUC7L3O95232 432 aaKnown RBP6.35□□□□□ -1.39
USP40-202ENST00000409945 ALDOCP09972 364 aaKnown RBP6.35□□□□□ -1.39
USP40-202ENST00000409945 CISD3P0C7P0 127 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 KRT3P12035 628 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 OXTRP30559 389 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 RDXP35241 583 aaKnown RBP6.35□□□□□ -1.39
USP40-202ENST00000409945 VPS41P49754 854 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 KLK7P49862 253 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 ZNF84P51523 738 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 GEMIN4P57678 1058 aaKnown RBP6.35□□□□□ -1.39
USP40-202ENST00000409945 KRT83P78385 493 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 LPAL2Q16609 132 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 TTC31Q49AM3 519 aaPredicted RBP6.35□□□□□ -1.39
USP40-202ENST00000409945 DNTTIP2Q5QJE6 756 aaKnown RBP6.35□□□□□ -1.39
USP40-202ENST00000409945 WDR93Q6P2C0 686 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 DNAJC24Q6P3W2 148 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 RFWD3Q6PCD5 774 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 DCUN1D2Q6PH85 259 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 SUMF1Q8NBK3 374 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 PRCCQ92733 491 aaPredicted RBP6.35□□□□□ -1.39
USP40-202ENST00000409945 RNFT2Q96EX2 444 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 VCPIP1Q96JH7 1222 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 CCDC114Q96M63 670 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 HS6ST2Q96MM7 605 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 GABRG3Q99928 467 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 NCAPGQ9BPX3 1015 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 C11orf70Q9BRQ4 267 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 TKTL2Q9H0I9 626 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 ZNHIT6Q9NWK9 470 aaKnown RBP6.35□□□□□ -1.39
USP40-202ENST00000409945 THAP10Q9P2Z0 257 aaPredicted RBP6.35□□□□□ -1.39
USP40-202ENST00000409945 SLC25A13Q9UJS0 675 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 STON1Q9Y6Q2 735 aa6.35□□□□□ -1.39
USP40-202ENST00000409945 ATG2BQ96BY7 2078 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 KIAA1549LQ6ZVL6 1849 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 RIF1Q5UIP0 2472 aaKnown RBP6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms