RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 LDLRP01130 860 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 PROS1P07225 676 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 PRG2P13727 222 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 CD46P15529 392 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 L1CAMP32004 1257 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 HCAR3P49019 387 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 ENPEPQ07075 957 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 MAD2L1Q13257 205 aaPredicted RBP7.15□□□□□ -1.26
SCN9A-202ENST00000409435 PTPRNQ16849 979 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 SLC5A9Q2M3M2 681 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 HSD17B12Q53GQ0 312 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 KCNMB4Q86W47 210 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 PPP1R3BQ86XI6 285 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 ULK2Q8IYT8 1036 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 CENPSQ8N2Z9 138 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 PPP1R10Q96QC0 940 aaKnown RBP7.15□□□□□ -1.26
SCN9A-202ENST00000409435 ALG2Q9H553 416 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 NDUFAF4Q9P032 175 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 LRIT1Q9P2V4 623 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 FARSAQ9Y285 508 aaKnown RBP7.15□□□□□ -1.26
SCN9A-202ENST00000409435 CBY1Q9Y3M2 126 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 PCYT1BQ9Y5K3 369 aaPredicted RBP7.15□□□□□ -1.26
SCN9A-202ENST00000409435 N6AMT1Q9Y5N5 214 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 YJEFN3A6XGL0 299 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 I3L521 148 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 ENTPD5O75356 428 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 P04436 131 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 PRKCGP05129 697 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 SLC7A1P30825 629 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 SHMT2P34897 504 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 AP3S2P59780 193 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 SMAD2Q15796 467 aaKnown RBP7.15□□□□□ -1.26
SCN9A-202ENST00000409435 PKDCCQ504Y2 493 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 CERS6Q6ZMG9 384 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 FUKQ8N0W3 1084 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 ZNF641Q96N77 438 aaPredicted RBP7.15□□□□□ -1.26
SCN9A-202ENST00000409435 ZNF599Q96NL3 588 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 POLR3BQ9NW08 1133 aaPredicted RBP7.15□□□□□ -1.26
SCN9A-202ENST00000409435 HSFX1Q9UBD0 423 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 LOC100506127A0A0U1RQW1 187 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 C4BPAP04003 597 aaKnown RBP7.15□□□□□ -1.26
SCN9A-202ENST00000409435 NUDT7P0C024 238 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 CREB1P16220 341 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 ARCN1P48444 511 aaKnown RBP7.15□□□□□ -1.26
SCN9A-202ENST00000409435 EIF5AP63241 154 aaKnown RBP7.15□□□□□ -1.26
SCN9A-202ENST00000409435 MSLNQ13421 630 aaPredicted RBP7.15□□□□□ -1.26
SCN9A-202ENST00000409435 PDK3Q15120 406 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 RALGPS1Q5JS13 557 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 ZNF783Q6ZMS7 281 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 FAM92BQ6ZTR7 304 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 RAB11FIP2Q7L804 512 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 IQCF2Q8IXL9 164 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 SDR16C5Q8N3Y7 309 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 IFI44Q8TCB0 444 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 USB1Q9BQ65 265 aaKnown RBP7.15□□□□□ -1.26
SCN9A-202ENST00000409435 RNPEPL1Q9HAU8 725 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 TAS2R14Q9NYV8 317 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 ACSL5Q9ULC5 683 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 KCNIP3Q9Y2W7 256 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 MYO9BQ13459 2157 aa7.15□□□□□ -1.26
SCN9A-202ENST00000409435 A0A1W2PQJ5 194 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 BCLAF3A2AJT9 711 aaKnown RBP7.15□□□□□ -1.27
SCN9A-202ENST00000409435 SNAP91O60641 907 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 F11P03951 625 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 ELF3P78545 371 aaPredicted RBP7.15□□□□□ -1.27
SCN9A-202ENST00000409435 ZMYND11Q15326 602 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 CYP51A1Q16850 503 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 SPANXN3Q5MJ09 141 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 SEL1L3Q68CR1 1132 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 FBXL22Q6P050 247 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 SLC22A9Q8IVM8 553 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 TMEM151BQ8IW70 566 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 TRPV3Q8NET8 790 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 UTP15Q8TED0 518 aaKnown RBP7.15□□□□□ -1.27
SCN9A-202ENST00000409435 TMEM40Q8WWA1 233 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 SORCS1Q8WY21 1168 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 HTRA1Q92743 480 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 ST6GALNAC4Q9H4F1 302 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 MED11Q9P086 117 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 LOC110117498-PIK3R3F6TDL0 507 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 TMEM189-UBE2V1I3L0A0 370 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 CYP17A1P05093 508 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 GNAO1P09471 354 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 PAICSP22234 425 aaKnown RBP7.15□□□□□ -1.27
SCN9A-202ENST00000409435 RPL10P27635 214 aaKnown RBP7.15□□□□□ -1.27
SCN9A-202ENST00000409435 RPL3P39023 403 aaKnown RBP7.15□□□□□ -1.27
SCN9A-202ENST00000409435 MAGEA4P43358 317 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 CEBPGP53567 150 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 WNT3AP56704 352 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 PCBP4P57723 403 aaKnown RBP7.15□□□□□ -1.27
SCN9A-202ENST00000409435 RASA2Q15283 850 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 DEFB109BQ30KR1 87 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 ZBTB2Q8N680 514 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 KBTBD7Q8WVZ9 684 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 MTFMTQ96DP5 389 aaKnown RBP7.15□□□□□ -1.27
SCN9A-202ENST00000409435 SSX3Q99909 188 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 IL22Q9GZX6 179 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 ISCUQ9H1K1 167 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 ACOT9Q9Y305 439 aa7.15□□□□□ -1.27
SCN9A-202ENST00000409435 CCDC154A6NI56 674 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms