RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 CASP9P55211 416 aa18.11■□□□□ 0.49
USP48-204ENST00000400301 MYBPC1Q00872 1141 aa18.11■□□□□ 0.49
USP48-204ENST00000400301 SGCGQ13326 291 aa18.11■□□□□ 0.49
USP48-204ENST00000400301 ZNF846Q147U1 533 aa18.11■□□□□ 0.49
USP48-204ENST00000400301 LETMD1Q6P1Q0 360 aa18.11■□□□□ 0.49
USP48-204ENST00000400301 PSMA8Q8TAA3 256 aa18.11■□□□□ 0.49
USP48-204ENST00000400301 TCF25Q9BQ70 676 aa18.11■□□□□ 0.49
USP48-204ENST00000400301 B4GALT6Q9UBX8 382 aa18.11■□□□□ 0.49
USP48-204ENST00000400301 KLHL3Q9UH77 587 aa18.11■□□□□ 0.49
USP48-204ENST00000400301 OGDHLQ9ULD0 1010 aa18.11■□□□□ 0.49
USP48-204ENST00000400301 DIRAS1O95057 198 aa18.11■□□□□ 0.49
USP48-204ENST00000400301 RPS17P08708 135 aaKnown RBP18.11■□□□□ 0.49
USP48-204ENST00000400301 STK19P49842 368 aaPredicted RBP18.11■□□□□ 0.49
USP48-204ENST00000400301 TYW3Q6IPR3 259 aaKnown RBP18.11■□□□□ 0.49
USP48-204ENST00000400301 KRT73Q86Y46 540 aa18.11■□□□□ 0.49
USP48-204ENST00000400301 PRICKLE1Q96MT3 831 aaPredicted RBP18.11■□□□□ 0.49
USP48-204ENST00000400301 RIOK2Q9BVS4 552 aaKnown RBP18.11■□□□□ 0.49
USP48-204ENST00000400301 SMG9Q9H0W8 520 aaKnown RBP18.11■□□□□ 0.49
USP48-204ENST00000400301 NOL6Q9H6R4 1146 aaKnown RBP18.11■□□□□ 0.49
USP48-204ENST00000400301 TUBA8Q9NY65 449 aaPredicted RBP18.11■□□□□ 0.49
USP48-204ENST00000400301 NDUFS2O75306 463 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 ZNF140P52738 457 aaPredicted RBP18.1■□□□□ 0.49
USP48-204ENST00000400301 SLC16A1P53985 500 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 OGFOD2Q6N063 350 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 ZNF783Q6ZMS7 281 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 PAGE2Q7Z2X7 111 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 RETREG3Q86VR2 466 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 OR8D1Q8WZ84 308 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 MTRRQ9UBK8 725 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 DOLKQ9UPQ8 538 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 PCDHB3Q9Y5E6 796 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 ATP1B2P14415 290 aaPredicted RBP18.1■□□□□ 0.49
USP48-204ENST00000400301 PCSK2P16519 638 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 JAK1P23458 1154 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 FMO3P31513 532 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 MANFP55145 182 aaKnown RBP18.1■□□□□ 0.49
USP48-204ENST00000400301 C22orf39Q6P5X5 142 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 ARMC1Q9NVT9 282 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 UBAP1Q9NZ09 502 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 IL17CQ9P0M4 197 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 GMPR2Q9P2T1 348 aaKnown RBP18.1■□□□□ 0.49
USP48-204ENST00000400301 TSC22D4Q9Y3Q8 395 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 CBSLP0DN79 551 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 CBSP35520 551 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 CTSKP43235 329 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 ABHD18Q0P651 414 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 MEP1AQ16819 746 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 TIMM50Q3ZCQ8 353 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 GOLM1Q8NBJ4 401 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 ING5Q8WYH8 240 aa18.1■□□□□ 0.49
USP48-204ENST00000400301 OR10H3O60404 316 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 SOCS5O75159 536 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 LAPTM4AQ15012 233 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 CST9Q5W186 159 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 MTSS1LQ765P7 747 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 C17orf64Q86WR6 236 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 ZNF366Q8N895 744 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 CLN6Q9NWW5 311 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 THG1LQ9NWX6 298 aaKnown RBP18.09■□□□□ 0.49
USP48-204ENST00000400301 KLHL28Q9NXS3 571 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 OARD1Q9Y530 152 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 ADAMTS4O75173 837 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 KRR1Q13601 381 aaKnown RBP18.09■□□□□ 0.49
USP48-204ENST00000400301 ARSIQ5FYB1 569 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 RBM48Q5RL73 367 aaKnown RBP18.09■□□□□ 0.49
USP48-204ENST00000400301 GCNT6Q5T4J0 391 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 NADSYN1Q6IA69 706 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 RD3Q7Z3Z2 195 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 GALNT7Q86SF2 657 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 OR8J3Q8NGG0 315 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 S100ZQ8WXG8 99 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 TCRBV3S1A0A5B6 114 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 TOR1BO14657 336 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 GSRP00390 522 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 BCKDHAP12694 445 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 HKDC1Q2TB90 917 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 RFTN2Q52LD8 501 aaPredicted RBP18.09■□□□□ 0.49
USP48-204ENST00000400301 GPR153Q6NV75 609 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 XKR5Q6UX68 686 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 P2RY8Q86VZ1 359 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 APCDD1Q8J025 514 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 MCFD2Q8NI22 146 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 TMEM125Q96AQ2 219 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 REXO4Q9GZR2 422 aaKnown RBP18.09■□□□□ 0.49
USP48-204ENST00000400301 H0Y858 1186 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 ERAL1O75616 437 aaKnown RBP18.09■□□□□ 0.49
USP48-204ENST00000400301 NR2F1P10589 423 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 ELK4P28324 431 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 LMAN2Q12907 356 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 MANEALQ5VSG8 457 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 OR2T5Q6IEZ7 315 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 CES5AQ6NT32 575 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 TRIM48Q8IWZ4 208 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 PGBD3Q8N328 593 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 C1orf52Q8N6N3 182 aaKnown RBP18.09■□□□□ 0.49
USP48-204ENST00000400301 OR2T29Q8NH02 315 aa18.09■□□□□ 0.49
USP48-204ENST00000400301 BRWD3Q6RI45 1802 aa18.08■□□□□ 0.49
USP48-204ENST00000400301 C1QTNF3-AMACRE9PGA6 284 aa18.08■□□□□ 0.49
USP48-204ENST00000400301 UBFD1O14562 309 aaKnown RBP18.08■□□□□ 0.49
USP48-204ENST00000400301 TRIM24O15164 1050 aa18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms