RNA–Protein interactions for RNA: ENST00000399256.4

APOB-202, Transcript of apolipoprotein B, humanhuman

TSL 1 (best) BASIC

Gene APOB, Length 3,128 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOB-202ENST00000399256 MYEOVQ96EZ4 313 aa13.67□□□□□ -0.22
APOB-202ENST00000399256 ITPAQ9BY32 194 aa13.67□□□□□ -0.22
APOB-202ENST00000399256 MMP27Q9H306 513 aa13.67□□□□□ -0.22
APOB-202ENST00000399256 RNF167Q9H6Y7 350 aa13.67□□□□□ -0.22
APOB-202ENST00000399256 PDP1Q9P0J1 537 aaPredicted RBP13.67□□□□□ -0.22
APOB-202ENST00000399256 AGO1Q9UL18 857 aaKnown RBP13.67□□□□□ -0.22
APOB-202ENST00000399256 CCL27Q9Y4X3 112 aa13.67□□□□□ -0.22
APOB-202ENST00000399256 SAGE2PA6NJ88 616 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 FAM220BPB1ANY3 271 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 PER2O15055 1255 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 SEC22BO75396 215 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 CCNKO75909 580 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 MC4RP32245 332 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 GPR15P49685 360 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 CXCR4P61073 352 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 MVKQ03426 396 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 FADDQ13158 208 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 SOWAHCQ53LP3 525 aaPredicted RBP13.66□□□□□ -0.22
APOB-202ENST00000399256 CCBE1Q6UXH8 406 aaPredicted RBP13.66□□□□□ -0.22
APOB-202ENST00000399256 TAS2R42Q7RTR8 314 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 GBF1Q92538 1859 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 SLC38A4Q969I6 547 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 SLC39A13Q96H72 371 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 INPP5KQ9BT40 448 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 EMILIN2Q9BXX0 1053 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 NACA2Q9H009 215 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 KIF17Q9P2E2 1029 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 LOC100506127A0A0U1RQW1 187 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 AREL1O15033 823 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 SSX4O60224 188 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 HOXA9P31269 272 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 GDF5P43026 501 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 ARHGDIAP52565 204 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 CREMQ03060 361 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 FAM110CQ1W6H9 321 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 KDM4DQ6B0I6 523 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 OR2T5Q6IEZ7 315 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 PARP16Q8N5Y8 322 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 KIAA1958Q8N8K9 716 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 OR52E4Q8NGH9 312 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 OR2T29Q8NH02 315 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 MTFMTQ96DP5 389 aaKnown RBP13.66□□□□□ -0.22
APOB-202ENST00000399256 TRIB3Q96RU7 358 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 NSUN3Q9H649 340 aaKnown RBP13.66□□□□□ -0.22
APOB-202ENST00000399256 CCNB1IP1Q9NPC3 277 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 NUDT4Q9NZJ9 180 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 TAF4O00268 1085 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 IL6P05231 212 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 PSEN2P49810 448 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 GALNT13Q8IUC8 556 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 EFHBQ8N7U6 833 aa13.66□□□□□ -0.22
APOB-202ENST00000399256 CPPED1Q9BRF8 314 aaPredicted RBP13.66□□□□□ -0.22
APOB-202ENST00000399256 ABI2Q9NYB9 513 aaPredicted RBP13.66□□□□□ -0.22
APOB-202ENST00000399256 RGS14O43566 566 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 WBP4O75554 376 aaKnown RBP13.65□□□□□ -0.22
APOB-202ENST00000399256 PTTG1O95997 202 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 OTCP00480 354 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 EPOP01588 193 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 C1QCP02747 245 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 ITGB1P05556 798 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 RGRP47804 291 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 TSPY1Q01534 308 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 CACHD1Q5VU97 1274 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 UBE2UQ5VVX9 321 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 ATG9BQ674R7 924 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 AGMOQ6ZNB7 445 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 GDPD3Q7L5L3 318 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 SNX20Q7Z614 316 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 CALHM3Q86XJ0 350 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 NLGN4XQ8N0W4 816 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 ATG16L2Q8NAA4 619 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 DNASE1L2Q92874 299 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 CLMPQ9H6B4 373 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 ANKHQ9HCJ1 492 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 AMBNQ9NP70 447 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 KRT84Q9NSB2 600 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 QPCTLQ9NXS2 382 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 NDRG4Q9ULP0 352 aaKnown RBP13.65□□□□□ -0.22
APOB-202ENST00000399256 RNF6Q9Y252 685 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 DOCK4Q8N1I0 1966 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 A0A096LPI6 279 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 TRBV5-3A0A0A0MS03 114 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 DSCR3O14972 297 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 IDH3BO43837 385 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 PCDHGA12O60330 932 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 PRAMEF11O60813 436 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 DNTTP04053 509 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 C21orf33P30042 268 aaPredicted RBP13.65□□□□□ -0.22
APOB-202ENST00000399256 PPP3CCP48454 512 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 GZMMP51124 257 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 PCBP2Q15366 365 aaKnown RBP eCLIP13.65□□□□□ -0.221e-13■■■□□ 16
APOB-202ENST00000399256 DDR2Q16832 855 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 LILRB4Q8NHJ6 448 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 GPR152Q8TDT2 470 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 PDLIM5Q96HC4 596 aaKnown RBP13.65□□□□□ -0.22
APOB-202ENST00000399256 REXO4Q9GZR2 422 aaKnown RBP13.65□□□□□ -0.22
APOB-202ENST00000399256 GABARAPL1Q9H0R8 117 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 ST3GAL5Q9UNP4 418 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 HSPE1-MOB4S4R3N1 261 aa13.65□□□□□ -0.22
APOB-202ENST00000399256 MYO16Q9Y6X6 1858 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms