RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 NSUN3Q9H649 340 aaKnown RBP6.4□□□□□ -1.38
SMC1A-202ENST00000375340 CDC14AQ9UNH5 594 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 XIRP1Q702N8 1843 aaKnown RBP6.4□□□□□ -1.38
SMC1A-202ENST00000375340 MEIS3P2A8K0S8 358 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 SEPT4O43236 478 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 OR1E2P47887 323 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 ARL4DP49703 201 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 NKX2-5P52952 324 aaPredicted RBP6.4□□□□□ -1.38
SMC1A-202ENST00000375340 ITGA1P56199 1179 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 RAB25P57735 213 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 TUBA4AP68366 448 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 SDE2Q6IQ49 451 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 CES5AQ6NT32 575 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 SLC15A4Q8N697 577 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 OR52L1Q8NGH7 329 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 HERC2P3Q9BVR0 1158 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 MCUBQ9NWR8 336 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 SCML2Q9UQR0 700 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 S1PR4O95977 384 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 ESR1P03372 595 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 ITGB1P05556 798 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 DNAJA1P31689 397 aaKnown RBP6.4□□□□□ -1.38
SMC1A-202ENST00000375340 CPOXP36551 454 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 APLP1P51693 650 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 SGCGQ13326 291 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 ATP13A5Q4VNC0 1218 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 KLHL35Q6PF15 583 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 SNX20Q7Z614 316 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 SNX29P2Q8IUI4 249 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 TMEM126BQ8IUX1 230 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 OR10T2Q8NGX3 314 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 CLP1Q92989 425 aaKnown RBP6.4□□□□□ -1.38
SMC1A-202ENST00000375340 SLC29A1Q99808 456 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 ABCB8Q9NUT2 735 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 ZNF451Q9Y4E5 1061 aa6.4□□□□□ -1.38
SMC1A-202ENST00000375340 BHMG1C9JSJ3 638 aaPredicted RBP6.4□□□□□ -1.39
SMC1A-202ENST00000375340 NME4O00746 187 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 KCNE1P15382 129 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 CCND3P30281 292 aaPredicted RBP6.4□□□□□ -1.39
SMC1A-202ENST00000375340 DUOXA1Q1HG43 343 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 FAM110CQ1W6H9 321 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 CAPN13Q6MZZ7 669 aaPredicted RBP6.4□□□□□ -1.39
SMC1A-202ENST00000375340 ZNF534Q76KX8 674 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 TRPV3Q8NET8 790 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 OR10G2Q8NGC3 310 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 ZUFSPQ96AP4 578 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 TADA1Q96BN2 335 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 MAGEB10Q96LZ2 347 aaPredicted RBP6.4□□□□□ -1.39
SMC1A-202ENST00000375340 BARD1Q99728 777 aaKnown RBP6.4□□□□□ -1.39
SMC1A-202ENST00000375340 ITPAQ9BY32 194 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 CENPXA8MT69 81 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 ZNF487B1APH4 448 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 SLC22A1O15245 554 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 GRM6O15303 877 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 INMTO95050 263 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 PSKH1P11801 424 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 PRG2P13727 222 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 FDXRP22570 491 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 LEPRP48357 1165 aaKnown RBP6.4□□□□□ -1.39
SMC1A-202ENST00000375340 PCBP2Q15366 365 aaKnown RBP eCLIP6.4□□□□□ -1.394e-19■■■■■ 31.2
SMC1A-202ENST00000375340 SMARCD3Q6STE5 483 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 CDK20Q8IZL9 346 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 CEP295NLQ96MC4 621 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 ZNF607Q96SK3 696 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 DUSP26Q9BV47 211 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 DCSTAMPQ9H295 470 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 CLEC4MQ9H2X3 399 aaPredicted RBP6.4□□□□□ -1.39
SMC1A-202ENST00000375340 CCM2LQ9NUG4 571 aaPredicted RBP6.4□□□□□ -1.39
SMC1A-202ENST00000375340 ASF1AQ9Y294 204 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 N6AMT1Q9Y5N5 214 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 K7EPI3 171 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 MITFO75030 526 aaPredicted RBP6.4□□□□□ -1.39
SMC1A-202ENST00000375340 CDK14O94921 469 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 MYF6P23409 242 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 FLT3LGP49771 235 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 CLDN19Q8N6F1 224 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 ST13P5Q8NFI4 369 aaPredicted RBP6.4□□□□□ -1.39
SMC1A-202ENST00000375340 IL4I1Q96RQ9 567 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 R3HDMLQ9H3Y0 253 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 C14orf119Q9NWQ9 140 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 ANKRD31Q8N7Z5 1873 aa6.4□□□□□ -1.39
SMC1A-202ENST00000375340 IGKV6D-21A0A0A0MT36 114 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 SAGE2PA6NJ88 616 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 ZBTB42B2RXF5 422 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 AKIRIN2Q53H80 203 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 LCN1P1Q5VSP4 162 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 PLPP4Q5VZY2 271 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 HMGN2P46Q86SG4 172 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 FAM98AQ8NCA5 519 aaKnown RBP6.39□□□□□ -1.39
SMC1A-202ENST00000375340 FAM110BQ8TC76 370 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 FNDC8Q8TC99 324 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 CYB5D2Q8WUJ1 264 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 AP3S1Q92572 193 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 RELTQ969Z4 430 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 TBX5Q99593 518 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 SEC14L3Q9UDX4 400 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 PSME2Q9UL46 239 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 SLC22A14Q9Y267 594 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 FADS2P1A8MWK0 482 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 GADD45GO95257 159 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms